miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 3' -58 NC_003521.1 + 129589 0.66 0.930703
Target:  5'- cCGCGCCG-CGCCGGcc--GCGAc--- -3'
miRNA:   3'- -GCGCGGCuGCGGCCcuuuCGCUucug -5'
14600 3' -58 NC_003521.1 + 136004 0.66 0.930703
Target:  5'- cCGCGUC-ACGCCcguguucucGGGGAucAGCGAGGugGCg -3'
miRNA:   3'- -GCGCGGcUGCGG---------CCCUU--UCGCUUC--UG- -5'
14600 3' -58 NC_003521.1 + 137483 0.66 0.930703
Target:  5'- gGCGCCGGCGUgucgCGGcGccGCGAGGuCu -3'
miRNA:   3'- gCGCGGCUGCG----GCCcUuuCGCUUCuG- -5'
14600 3' -58 NC_003521.1 + 197418 0.66 0.930703
Target:  5'- gGC-CaCGACGCC--GAAAGCGAAGAg -3'
miRNA:   3'- gCGcG-GCUGCGGccCUUUCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 104195 0.66 0.930703
Target:  5'- cCGCGcCCGugGCCGauuacguGcugcugcagcccAGCGAGGACg -3'
miRNA:   3'- -GCGC-GGCugCGGCccu----U------------UCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 150625 0.66 0.930703
Target:  5'- uGCGgCGGCuGCUGcGcAGGCGggGGCg -3'
miRNA:   3'- gCGCgGCUG-CGGCcCuUUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 121035 0.66 0.930703
Target:  5'- -cCGCUGGCGCCG-GAAGGUGGAc-- -3'
miRNA:   3'- gcGCGGCUGCGGCcCUUUCGCUUcug -5'
14600 3' -58 NC_003521.1 + 57575 0.66 0.930703
Target:  5'- gCGCGCCuucgagGGCGCCGGc--GGCGAAc-- -3'
miRNA:   3'- -GCGCGG------CUGCGGCCcuuUCGCUUcug -5'
14600 3' -58 NC_003521.1 + 111099 0.66 0.930703
Target:  5'- aCGCGCuCGGCGUCGacGGGccGCGGccggcagaagcGGGCg -3'
miRNA:   3'- -GCGCG-GCUGCGGC--CCUuuCGCU-----------UCUG- -5'
14600 3' -58 NC_003521.1 + 153088 0.66 0.930703
Target:  5'- cCGgGCCGGggcccaccacgcCGCCGGGcgcgcGCGAcGGCa -3'
miRNA:   3'- -GCgCGGCU------------GCGGCCCuuu--CGCUuCUG- -5'
14600 3' -58 NC_003521.1 + 13718 0.66 0.930703
Target:  5'- uGCGCCaGgGCUGGGAAccgcucAGUGGcucGGACc -3'
miRNA:   3'- gCGCGGcUgCGGCCCUU------UCGCU---UCUG- -5'
14600 3' -58 NC_003521.1 + 3693 0.66 0.930212
Target:  5'- -aUGCUGACG-CGGGAuauaaaaGGGCGGAGGa -3'
miRNA:   3'- gcGCGGCUGCgGCCCU-------UUCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 26047 0.66 0.925693
Target:  5'- gGaCGgCGGCGagCGGGAGGGgGGAGAg -3'
miRNA:   3'- gC-GCgGCUGCg-GCCCUUUCgCUUCUg -5'
14600 3' -58 NC_003521.1 + 49114 0.66 0.925693
Target:  5'- gCGCGUggugaccgCGGCGCCGcugcuGCGggGACu -3'
miRNA:   3'- -GCGCG--------GCUGCGGCccuuuCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 148215 0.66 0.925693
Target:  5'- aGCGUCGGCGUauGGAGAuGCaugacguuGAAGGCc -3'
miRNA:   3'- gCGCGGCUGCGgcCCUUU-CG--------CUUCUG- -5'
14600 3' -58 NC_003521.1 + 178720 0.66 0.925693
Target:  5'- cCGCGCgGGCGCCG---AAGCGuucccgguuGGACu -3'
miRNA:   3'- -GCGCGgCUGCGGCccuUUCGCu--------UCUG- -5'
14600 3' -58 NC_003521.1 + 144042 0.66 0.925693
Target:  5'- aGCGCCGcCGCUGcugccGGCGgcGACg -3'
miRNA:   3'- gCGCGGCuGCGGCccuu-UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 167161 0.66 0.925693
Target:  5'- gGCGCCucgGGCGUCuuGGAGgcggccgcGGCGGAGGCc -3'
miRNA:   3'- gCGCGG---CUGCGGc-CCUU--------UCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 43080 0.66 0.925693
Target:  5'- gGC-CCGGCGUCcaccGGAGcuAGCGggGAUg -3'
miRNA:   3'- gCGcGGCUGCGGc---CCUU--UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 207910 0.66 0.925693
Target:  5'- gGcCGCCaccuACGCCGGG--GGCGGcGGGCa -3'
miRNA:   3'- gC-GCGGc---UGCGGCCCuuUCGCU-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.