miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 3' -63.9 NC_003521.1 + 34383 0.66 0.690406
Target:  5'- cGCaCCAGCAGGUggUGGCgCUCggGCCAg -3'
miRNA:   3'- -CGcGGUCGUCCA--GCCG-GAGggCGGUg -5'
14601 3' -63.9 NC_003521.1 + 142390 0.66 0.690406
Target:  5'- aGC-CCAGgAGGccgCGGCC-CUgGCCGCc -3'
miRNA:   3'- -CGcGGUCgUCCa--GCCGGaGGgCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 218627 0.66 0.690406
Target:  5'- aGCGCgCGGCGGuaagCGGCCacggCCgGCgGCg -3'
miRNA:   3'- -CGCG-GUCGUCca--GCCGGa---GGgCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 24558 0.66 0.690406
Target:  5'- -aGCUGGCGcuacuacucGG-CGGCCUCCuCGuCCACc -3'
miRNA:   3'- cgCGGUCGU---------CCaGCCGGAGG-GC-GGUG- -5'
14601 3' -63.9 NC_003521.1 + 121055 0.66 0.690406
Target:  5'- uGCGCCGGUcccAGGUgugcUGGUaCUCCagcuuGCCGCa -3'
miRNA:   3'- -CGCGGUCG---UCCA----GCCG-GAGGg----CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 117239 0.66 0.690406
Target:  5'- cGCGgCGGCucccGG-CGccgccGCCaUCCCGCCACc -3'
miRNA:   3'- -CGCgGUCGu---CCaGC-----CGG-AGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 222527 0.66 0.690406
Target:  5'- -aGCacaGGCGaaagaaacugcGGUgCGGcCCUCCCGUCGCg -3'
miRNA:   3'- cgCGg--UCGU-----------CCA-GCC-GGAGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 96073 0.66 0.690406
Target:  5'- cCGCCAGCagccGGGUCaGCUcCUCGUCAUc -3'
miRNA:   3'- cGCGGUCG----UCCAGcCGGaGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 104207 0.66 0.690406
Target:  5'- aGCG-CAGCGucUCGGCCUCCuCG-CACg -3'
miRNA:   3'- -CGCgGUCGUccAGCCGGAGG-GCgGUG- -5'
14601 3' -63.9 NC_003521.1 + 155695 0.66 0.690406
Target:  5'- cCGCCgaGGgAGGcuaCGuGCCgCCCGCCGCu -3'
miRNA:   3'- cGCGG--UCgUCCa--GC-CGGaGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 164820 0.66 0.684791
Target:  5'- aGCGCCcGCGGGggaggaggaaccggCGGCCgg-CGCCAg -3'
miRNA:   3'- -CGCGGuCGUCCa-------------GCCGGaggGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 148418 0.66 0.68104
Target:  5'- -aGCCAugguGCGGG-CGGCCgcgCCgGCgGCu -3'
miRNA:   3'- cgCGGU----CGUCCaGCCGGa--GGgCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 43257 0.66 0.68104
Target:  5'- aGCGCCAGCucccgAGcUCaGGagCUCgCCGCCGCu -3'
miRNA:   3'- -CGCGGUCG-----UCcAG-CCg-GAG-GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 96766 0.66 0.68104
Target:  5'- aGCGCCGcCAGcUCGGCCaugCagaagCGCCGCa -3'
miRNA:   3'- -CGCGGUcGUCcAGCCGGa--Gg----GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 108514 0.66 0.68104
Target:  5'- gGCGCaC-GCGGGagauuuugUUGGCCUCCaCGUgGCg -3'
miRNA:   3'- -CGCG-GuCGUCC--------AGCCGGAGG-GCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 210021 0.66 0.68104
Target:  5'- uCGCCGGCGGGcccUCGGUgcgCUaCCgCGcCCACa -3'
miRNA:   3'- cGCGGUCGUCC---AGCCG---GA-GG-GC-GGUG- -5'
14601 3' -63.9 NC_003521.1 + 178590 0.66 0.68104
Target:  5'- cGCGuCCAGcCGGG-CGcCCUCCUGCagCACg -3'
miRNA:   3'- -CGC-GGUC-GUCCaGCcGGAGGGCG--GUG- -5'
14601 3' -63.9 NC_003521.1 + 33745 0.66 0.68104
Target:  5'- cUGCCGaCAGGUCaGCCgucUCCUGCCcuGCa -3'
miRNA:   3'- cGCGGUcGUCCAGcCGG---AGGGCGG--UG- -5'
14601 3' -63.9 NC_003521.1 + 223037 0.66 0.680101
Target:  5'- -gGCCAGCAcgccGaCGGCCUCCaggucauCGUCACa -3'
miRNA:   3'- cgCGGUCGUc---CaGCCGGAGG-------GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 177747 0.66 0.678223
Target:  5'- cGCGCCGGCgcagcuguacgGGGUCgcggucgucgccagGGCCgacggggCCUGuCCGCu -3'
miRNA:   3'- -CGCGGUCG-----------UCCAG--------------CCGGa------GGGC-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.