miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 5' -57.1 NC_003521.1 + 164433 0.66 0.94494
Target:  5'- uGGUGcuagcagcgccaccgCGGccgcGGCCGUCACGGUCGccGCu -3'
miRNA:   3'- uCCACa--------------GCUu---CCGGCAGUGCCGGU--UG- -5'
14601 5' -57.1 NC_003521.1 + 195479 0.66 0.944511
Target:  5'- uGGGUcgccguuccacGUCGGcgaagAGGUCGUagccguCGGCCAGCu -3'
miRNA:   3'- -UCCA-----------CAGCU-----UCCGGCAgu----GCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 7391 0.66 0.944511
Target:  5'- aAGGgaccgcGUCG-AGGCCGUCggagccaccGgGGCCAGg -3'
miRNA:   3'- -UCCa-----CAGCuUCCGGCAG---------UgCCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 76950 0.66 0.944511
Target:  5'- cGGUG-CGuuccaGCaUGUCGCGGCCGAUg -3'
miRNA:   3'- uCCACaGCuuc--CG-GCAGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 31812 0.66 0.944511
Target:  5'- gAGGcGUUuGAGcGCCGUCuCGGCCcgGGCg -3'
miRNA:   3'- -UCCaCAGcUUC-CGGCAGuGCCGG--UUG- -5'
14601 5' -57.1 NC_003521.1 + 176924 0.66 0.944511
Target:  5'- uGGg--CGggGGUCGUgggGCGGUCAGCc -3'
miRNA:   3'- uCCacaGCuuCCGGCAg--UGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 5534 0.66 0.944511
Target:  5'- cGGUGaCGGcaGCCGgCGCGGCCGc- -3'
miRNA:   3'- uCCACaGCUucCGGCaGUGCCGGUug -5'
14601 5' -57.1 NC_003521.1 + 104890 0.66 0.944511
Target:  5'- gAGGcGUCGcacaucccgcGGCCGUgGCcgaGGCCGGCa -3'
miRNA:   3'- -UCCaCAGCuu--------CCGGCAgUG---CCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 186525 0.66 0.940095
Target:  5'- cGGUGUCGccagcgGGGGCUccgugGgaggCAgGGCCGGCa -3'
miRNA:   3'- uCCACAGC------UUCCGG-----Ca---GUgCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 87145 0.66 0.940095
Target:  5'- gAGGUGUUGGagcGGGCgcaguucgugCG-CGCGGCCGuGCa -3'
miRNA:   3'- -UCCACAGCU---UCCG----------GCaGUGCCGGU-UG- -5'
14601 5' -57.1 NC_003521.1 + 95861 0.66 0.940095
Target:  5'- cAGGaUGUCGcgcaGCCcuucGUCGCGaGCCAGCg -3'
miRNA:   3'- -UCC-ACAGCuuc-CGG----CAGUGC-CGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 93324 0.66 0.940095
Target:  5'- uGGUGcuUCG-GGGCCGuguuccucaUCugGGCCAc- -3'
miRNA:   3'- uCCAC--AGCuUCCGGC---------AGugCCGGUug -5'
14601 5' -57.1 NC_003521.1 + 216902 0.66 0.939641
Target:  5'- cAGGUGagGAGGGCgCGguggCagcggagGCGGUCGACc -3'
miRNA:   3'- -UCCACagCUUCCG-GCa---G-------UGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 167914 0.66 0.935459
Target:  5'- cAGGUGgggcgccgcgaUCGAGGGguaCGUCAggaGGCUGACg -3'
miRNA:   3'- -UCCAC-----------AGCUUCCg--GCAGUg--CCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 38298 0.66 0.935459
Target:  5'- cAGGUG-CGAGaGCuCGU--CGGCCAGCg -3'
miRNA:   3'- -UCCACaGCUUcCG-GCAguGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 101375 0.66 0.935459
Target:  5'- cGGGUGcgCGA--GCCGUCgcgccgcuugACGGCCAcGCa -3'
miRNA:   3'- -UCCACa-GCUucCGGCAG----------UGCCGGU-UG- -5'
14601 5' -57.1 NC_003521.1 + 174687 0.66 0.935459
Target:  5'- cGGGUG-CGAGGGguccCCGcugaucuguuUCACGGCCu-- -3'
miRNA:   3'- -UCCACaGCUUCC----GGC----------AGUGCCGGuug -5'
14601 5' -57.1 NC_003521.1 + 177447 0.66 0.935459
Target:  5'- cGGUGUUGAA-GCCGUagaaGCuGCUGACg -3'
miRNA:   3'- uCCACAGCUUcCGGCAg---UGcCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 238525 0.66 0.935459
Target:  5'- cAGGUG-CGAGaGCuCGU--CGGCCAGCg -3'
miRNA:   3'- -UCCACaGCUUcCG-GCAguGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 43482 0.66 0.930601
Target:  5'- cGGcgGcCGugcuGGCCGcgGCGGCCAACa -3'
miRNA:   3'- uCCa-CaGCuu--CCGGCagUGCCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.