miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14602 3' -60.2 NC_003521.1 + 110546 0.66 0.835076
Target:  5'- --cGCCCAGGuAGCcGgagaGGgCGCCCAc -3'
miRNA:   3'- cauCGGGUCC-UUGuCag--CCgGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 43270 0.66 0.835076
Target:  5'- -gAGCUCAGGAGCucgCcGCCGCUCu -3'
miRNA:   3'- caUCGGGUCCUUGucaGcCGGCGGGu -5'
14602 3' -60.2 NC_003521.1 + 94144 0.66 0.835076
Target:  5'- --uGCUCAGGGagcuGCGGUCGGCUucguuGCCg- -3'
miRNA:   3'- cauCGGGUCCU----UGUCAGCCGG-----CGGgu -5'
14602 3' -60.2 NC_003521.1 + 119868 0.66 0.835076
Target:  5'- -gGGCCUcGGuccGCAGUCGGUucuccucguCGCCCc -3'
miRNA:   3'- caUCGGGuCCu--UGUCAGCCG---------GCGGGu -5'
14602 3' -60.2 NC_003521.1 + 227640 0.66 0.835076
Target:  5'- uGgcGUgCAGuGACAG-CGGCCGUCCGg -3'
miRNA:   3'- -CauCGgGUCcUUGUCaGCCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 218596 0.66 0.835076
Target:  5'- -cAGCCagugaaagAGGuACGGuUCGGCCGCCa- -3'
miRNA:   3'- caUCGGg-------UCCuUGUC-AGCCGGCGGgu -5'
14602 3' -60.2 NC_003521.1 + 167828 0.66 0.835076
Target:  5'- -cAGCCagagCAGGAGCGGccaGGCCcCCCGc -3'
miRNA:   3'- caUCGG----GUCCUUGUCag-CCGGcGGGU- -5'
14602 3' -60.2 NC_003521.1 + 43431 0.66 0.835076
Target:  5'- --uGCCCgacgAGGAgGCGG-CGGCgGCCCu -3'
miRNA:   3'- cauCGGG----UCCU-UGUCaGCCGgCGGGu -5'
14602 3' -60.2 NC_003521.1 + 35197 0.66 0.827122
Target:  5'- -cGGaCCCAGGGACAGggGGCgCGCg-- -3'
miRNA:   3'- caUC-GGGUCCUUGUCagCCG-GCGggu -5'
14602 3' -60.2 NC_003521.1 + 90106 0.66 0.827122
Target:  5'- cGUGGCCCAcGGccgagagcCAGUC-GCCGCCg- -3'
miRNA:   3'- -CAUCGGGU-CCuu------GUCAGcCGGCGGgu -5'
14602 3' -60.2 NC_003521.1 + 139605 0.66 0.827122
Target:  5'- -cGGCaCCAGGAACA--CGGUgGCCUu -3'
miRNA:   3'- caUCG-GGUCCUUGUcaGCCGgCGGGu -5'
14602 3' -60.2 NC_003521.1 + 226604 0.66 0.827122
Target:  5'- cGUAGCCCAGcGGcguCAGg-GGCuCGCCgCAg -3'
miRNA:   3'- -CAUCGGGUC-CUu--GUCagCCG-GCGG-GU- -5'
14602 3' -60.2 NC_003521.1 + 78179 0.66 0.827122
Target:  5'- gGUGGCgCCGauagagcguGGGACuGUggaggaagaaaCGGCCGCCCu -3'
miRNA:   3'- -CAUCG-GGU---------CCUUGuCA-----------GCCGGCGGGu -5'
14602 3' -60.2 NC_003521.1 + 113077 0.66 0.827122
Target:  5'- -gGGCUacgAGGcGCAGaCGGCCGCCg- -3'
miRNA:   3'- caUCGGg--UCCuUGUCaGCCGGCGGgu -5'
14602 3' -60.2 NC_003521.1 + 101812 0.66 0.827122
Target:  5'- -aAGCCCAgGGGGCGGUcgCGGUagGCCUc -3'
miRNA:   3'- caUCGGGU-CCUUGUCA--GCCGg-CGGGu -5'
14602 3' -60.2 NC_003521.1 + 94405 0.66 0.827122
Target:  5'- cGUAGCCgcgCAGGuuGACg--CGGCgGCCCAu -3'
miRNA:   3'- -CAUCGG---GUCC--UUGucaGCCGgCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 193246 0.66 0.819007
Target:  5'- --cGCCUGGGGuaccccggauACGGUCGGCUGCg-- -3'
miRNA:   3'- cauCGGGUCCU----------UGUCAGCCGGCGggu -5'
14602 3' -60.2 NC_003521.1 + 136123 0.66 0.819007
Target:  5'- -cGGUCgAGG-GCAcGUCGacGCCGCCCAc -3'
miRNA:   3'- caUCGGgUCCuUGU-CAGC--CGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 121887 0.66 0.819007
Target:  5'- cUGGCCCugacGGGACg--CcGCCGCCCAc -3'
miRNA:   3'- cAUCGGGu---CCUUGucaGcCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 226364 0.66 0.819007
Target:  5'- --cGCCgCGGGAGCGG-CGGCUGaCgCCGc -3'
miRNA:   3'- cauCGG-GUCCUUGUCaGCCGGC-G-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.