miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 3' -63.8 NC_003521.1 + 132635 0.66 0.731693
Target:  5'- --cGGCGG-CGGCGccaCCGGcgguucugcuUCCUCGUc -3'
miRNA:   3'- ccaCCGCCuGCCGCc--GGCC----------AGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 175165 0.66 0.731693
Target:  5'- gGGUcGCGGAUGGCGuucuCCaGGUCCUgGc -3'
miRNA:   3'- -CCAcCGCCUGCCGCc---GG-CCAGGAgCa -5'
14603 3' -63.8 NC_003521.1 + 75550 0.66 0.726314
Target:  5'- --cGGCGccGGCGGCGGCuacgccagcgcccucCuGUCCUCGUc -3'
miRNA:   3'- ccaCCGC--CUGCCGCCG---------------GcCAGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 59285 0.66 0.722715
Target:  5'- -cUGaGCGGucGCGGCGGCCcgcuaGUCUUCGc -3'
miRNA:   3'- ccAC-CGCC--UGCCGCCGGc----CAGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 196889 0.66 0.722715
Target:  5'- gGGUgaGGCcgGGGCGGaaGGCgGGUCgUCGUu -3'
miRNA:   3'- -CCA--CCG--CCUGCCg-CCGgCCAGgAGCA- -5'
14603 3' -63.8 NC_003521.1 + 43440 0.66 0.722715
Target:  5'- aGGaGGCGG-CGGCGGCCcuGGaaCUCu- -3'
miRNA:   3'- -CCaCCGCCuGCCGCCGG--CCagGAGca -5'
14603 3' -63.8 NC_003521.1 + 199379 0.66 0.722715
Target:  5'- cGUGGUGuaGACGGCGGCgGGgg-UCGa -3'
miRNA:   3'- cCACCGC--CUGCCGCCGgCCaggAGCa -5'
14603 3' -63.8 NC_003521.1 + 78134 0.66 0.721813
Target:  5'- uGGUgGGCGcguuagcGGCGGCGGCCGcGaacgaggcacgaUCCUgGUg -3'
miRNA:   3'- -CCA-CCGC-------CUGCCGCCGGC-C------------AGGAgCA- -5'
14603 3' -63.8 NC_003521.1 + 87765 0.66 0.721813
Target:  5'- cGGcGGCGGAggaggccUGGgGGCCG--CCUCGUc -3'
miRNA:   3'- -CCaCCGCCU-------GCCgCCGGCcaGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 165749 0.66 0.713672
Target:  5'- aGGgagGGCGG-CGGCGGCUuGcCCaucaUCGUg -3'
miRNA:   3'- -CCa--CCGCCuGCCGCCGGcCaGG----AGCA- -5'
14603 3' -63.8 NC_003521.1 + 76547 0.66 0.713672
Target:  5'- cGGUGGCuguccaGGAgCGGCGGuCCGcG-CCUCc- -3'
miRNA:   3'- -CCACCG------CCU-GCCGCC-GGC-CaGGAGca -5'
14603 3' -63.8 NC_003521.1 + 177585 0.66 0.713672
Target:  5'- aGGUGGCGG-C-GCcGCCGGUUC-CGg -3'
miRNA:   3'- -CCACCGCCuGcCGcCGGCCAGGaGCa -5'
14603 3' -63.8 NC_003521.1 + 170871 0.66 0.713672
Target:  5'- cGGgGGCGGGC-GCGGgUGGUCaggCGUc -3'
miRNA:   3'- -CCaCCGCCUGcCGCCgGCCAGga-GCA- -5'
14603 3' -63.8 NC_003521.1 + 164214 0.66 0.713672
Target:  5'- gGGcGGCGGugguaGCGGCGGCUGGacgguggaggCUCGg -3'
miRNA:   3'- -CCaCCGCC-----UGCCGCCGGCCag--------GAGCa -5'
14603 3' -63.8 NC_003521.1 + 229404 0.66 0.713672
Target:  5'- gGGUGGCGGguACGGggacaCGGCguauaaGGUUCUCa- -3'
miRNA:   3'- -CCACCGCC--UGCC-----GCCGg-----CCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 168577 0.66 0.712764
Target:  5'- aGGUGGCGGcugacccaGCGGCGGCauggacaUGGgcugCUgggCGUg -3'
miRNA:   3'- -CCACCGCC--------UGCCGCCG-------GCCa---GGa--GCA- -5'
14603 3' -63.8 NC_003521.1 + 103988 0.66 0.710948
Target:  5'- gGGUGGUGaaGACGGCGuaguacaugcgcacGCCGGggUCgUCGg -3'
miRNA:   3'- -CCACCGC--CUGCCGC--------------CGGCC--AGgAGCa -5'
14603 3' -63.8 NC_003521.1 + 39889 0.66 0.704572
Target:  5'- uGG-GGUGGGCGuGCGGUC-GUCC-CGg -3'
miRNA:   3'- -CCaCCGCCUGC-CGCCGGcCAGGaGCa -5'
14603 3' -63.8 NC_003521.1 + 77721 0.66 0.704572
Target:  5'- cGGUGGuCGuGGCgcuGGCgcccgaggacgGGCCGG-CCUCGg -3'
miRNA:   3'- -CCACC-GC-CUG---CCG-----------CCGGCCaGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 195198 0.66 0.704572
Target:  5'- --cGGCGG-CGGUGGCC-GUCUgCGUc -3'
miRNA:   3'- ccaCCGCCuGCCGCCGGcCAGGaGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.