miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 5' -59.5 NC_003521.1 + 88507 0.66 0.853872
Target:  5'- cGGCACGcgcagcgacucgcaGCCgugcAGGCGCACCGaaacggccuccucgGGGCAg -3'
miRNA:   3'- aUUGUGC--------------CGG----UCCGUGUGGCa-------------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 206431 0.66 0.853119
Target:  5'- cAACGgGGCguGGUguaGCGauugaCGUGGGCGg -3'
miRNA:   3'- aUUGUgCCGguCCG---UGUg----GCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 39197 0.66 0.853119
Target:  5'- cGACgACGGUCGGGgAC-CCGUaGGaGCAu -3'
miRNA:   3'- aUUG-UGCCGGUCCgUGuGGCA-CC-CGU- -5'
14603 5' -59.5 NC_003521.1 + 77119 0.66 0.853119
Target:  5'- gGAUuCGGCCucguGGC-CGCCGUuGGCGc -3'
miRNA:   3'- aUUGuGCCGGu---CCGuGUGGCAcCCGU- -5'
14603 5' -59.5 NC_003521.1 + 79503 0.66 0.853119
Target:  5'- -uGCAC-GCCGGaGCGCuuGCUGgUGGGCAg -3'
miRNA:   3'- auUGUGcCGGUC-CGUG--UGGC-ACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 56840 0.66 0.853119
Target:  5'- -cACGCGGCCuaucAGGCGgACUacgGGGCc -3'
miRNA:   3'- auUGUGCCGG----UCCGUgUGGca-CCCGu -5'
14603 5' -59.5 NC_003521.1 + 169763 0.66 0.853119
Target:  5'- cAACGuCGGCCcauGGCgccGCGCUuUGGGCGc -3'
miRNA:   3'- aUUGU-GCCGGu--CCG---UGUGGcACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 104676 0.66 0.853119
Target:  5'- aAACGCGGagcuCgAGG-GgGCCGUGGGCGg -3'
miRNA:   3'- aUUGUGCC----GgUCCgUgUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 47194 0.66 0.853119
Target:  5'- cGACGUGGUCAGGUuuCAgCGcGGGCAa -3'
miRNA:   3'- aUUGUGCCGGUCCGu-GUgGCaCCCGU- -5'
14603 5' -59.5 NC_003521.1 + 168606 0.66 0.853119
Target:  5'- -uGCACGGCgAGuGCGCcUCGUgcagucacGGGCAg -3'
miRNA:   3'- auUGUGCCGgUC-CGUGuGGCA--------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 138784 0.66 0.853119
Target:  5'- cAACcCGGCCGugcuGCGCGCCGUGGc-- -3'
miRNA:   3'- aUUGuGCCGGUc---CGUGUGGCACCcgu -5'
14603 5' -59.5 NC_003521.1 + 27090 0.66 0.853119
Target:  5'- --cCACGGCCuucuGCgGCGCCGUcuggcuGGGCAu -3'
miRNA:   3'- auuGUGCCGGuc--CG-UGUGGCA------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 98934 0.66 0.853119
Target:  5'- -cGCACGGCCGuGCgcaucACACUGaGGGCc -3'
miRNA:   3'- auUGUGCCGGUcCG-----UGUGGCaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 35139 0.66 0.853119
Target:  5'- -cAUGCuGGCCuacCugACCGUGGGCAu -3'
miRNA:   3'- auUGUG-CCGGuccGugUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 54316 0.66 0.850089
Target:  5'- cAGCGCGucgugcuccgucaCCAGGCGCACgGUGcacGGCAg -3'
miRNA:   3'- aUUGUGCc------------GGUCCGUGUGgCAC---CCGU- -5'
14603 5' -59.5 NC_003521.1 + 46318 0.66 0.850089
Target:  5'- cUAugACGGCCaucuugugcgaggaGGGCGCGUCGUcggacgaGGGCGa -3'
miRNA:   3'- -AUugUGCCGG--------------UCCGUGUGGCA-------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 235509 0.66 0.845488
Target:  5'- cGGC-CGGCgGGGCACGCCGccccGCGa -3'
miRNA:   3'- aUUGuGCCGgUCCGUGUGGCacc-CGU- -5'
14603 5' -59.5 NC_003521.1 + 1348 0.66 0.845488
Target:  5'- cAAC-CGGCUGGGgcugaaCGCGCCGcGGGCc -3'
miRNA:   3'- aUUGuGCCGGUCC------GUGUGGCaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 178797 0.66 0.845488
Target:  5'- gGACG-GGCgAGGCAUGCCcggcGGGCGg -3'
miRNA:   3'- aUUGUgCCGgUCCGUGUGGca--CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 126688 0.66 0.845488
Target:  5'- gGGCACcGCCAGGCAgUACuCGaccaugaucuUGGGCGc -3'
miRNA:   3'- aUUGUGcCGGUCCGU-GUG-GC----------ACCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.