miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 5' -58.2 NC_003521.1 + 17170 0.66 0.878162
Target:  5'- cGAGGCgCAGCGCUGgcaGCUgggCAGGCGCAu -3'
miRNA:   3'- -UUCCG-GUCGUGGUa--CGG---GUCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 236486 0.66 0.878162
Target:  5'- --cGCCGGCGgCGgugGCgCCAGGCAUGGa -3'
miRNA:   3'- uucCGGUCGUgGUa--CG-GGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 76207 0.66 0.878162
Target:  5'- uGGGCCAGaagccCGCCGgcacGCCCuGGGCGCGc -3'
miRNA:   3'- uUCCGGUC-----GUGGUa---CGGG-UCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 103477 0.66 0.878162
Target:  5'- gGAGGgCGGCuCCAgcggGCCCGcGugAUAGg -3'
miRNA:   3'- -UUCCgGUCGuGGUa---CGGGU-CugUGUC- -5'
14604 5' -58.2 NC_003521.1 + 15758 0.66 0.878162
Target:  5'- -cGGgCAGCAgCAUGCCCgAGcuACGCGa -3'
miRNA:   3'- uuCCgGUCGUgGUACGGG-UC--UGUGUc -5'
14604 5' -58.2 NC_003521.1 + 56465 0.66 0.878162
Target:  5'- aGAGGCgCcGCGCCAcgGCCCgcccgaAGAgGCAGu -3'
miRNA:   3'- -UUCCG-GuCGUGGUa-CGGG------UCUgUGUC- -5'
14604 5' -58.2 NC_003521.1 + 66366 0.66 0.878162
Target:  5'- gGAGGUCaAGUGCCAcGCCCAGAgGa-- -3'
miRNA:   3'- -UUCCGG-UCGUGGUaCGGGUCUgUguc -5'
14604 5' -58.2 NC_003521.1 + 151656 0.66 0.871066
Target:  5'- cAGGGCCAgGC-CCAcgGCCCAGcCGucCAGg -3'
miRNA:   3'- -UUCCGGU-CGuGGUa-CGGGUCuGU--GUC- -5'
14604 5' -58.2 NC_003521.1 + 93810 0.66 0.871066
Target:  5'- -cGGCUAaaaaacCACCGUgGUCCGGGCACGGc -3'
miRNA:   3'- uuCCGGUc-----GUGGUA-CGGGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 87777 0.66 0.871066
Target:  5'- cAGGCCAGgGCCAggUGCUgAGGCcCGu -3'
miRNA:   3'- uUCCGGUCgUGGU--ACGGgUCUGuGUc -5'
14604 5' -58.2 NC_003521.1 + 27806 0.66 0.871066
Target:  5'- -cGGCCGGCucGCCcgGCgCCAuGGUACAGa -3'
miRNA:   3'- uuCCGGUCG--UGGuaCG-GGU-CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 121102 0.66 0.871066
Target:  5'- cGGGCCGGgGCCAUcccGCUgAGGCugGu -3'
miRNA:   3'- uUCCGGUCgUGGUA---CGGgUCUGugUc -5'
14604 5' -58.2 NC_003521.1 + 87094 0.66 0.871066
Target:  5'- uGGGCCacggugGGCAUCGUGCCgCugguGGACGCGc -3'
miRNA:   3'- uUCCGG------UCGUGGUACGG-G----UCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 168658 0.66 0.870345
Target:  5'- cGAGGCaugccgaCGGCGCCGgagGUCCcuGGugGCAGg -3'
miRNA:   3'- -UUCCG-------GUCGUGGUa--CGGG--UCugUGUC- -5'
14604 5' -58.2 NC_003521.1 + 77094 0.66 0.863764
Target:  5'- --cGCCGGCGCCGcucauCCC-GACGCAGg -3'
miRNA:   3'- uucCGGUCGUGGUac---GGGuCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 191179 0.66 0.863764
Target:  5'- -uGGCUggAGCGCCAcUGCCCcccgcuGGAC-CAGg -3'
miRNA:   3'- uuCCGG--UCGUGGU-ACGGG------UCUGuGUC- -5'
14604 5' -58.2 NC_003521.1 + 209334 0.66 0.863764
Target:  5'- uGGGCCuGUGCCAa-CCCGcGACGCGGu -3'
miRNA:   3'- uUCCGGuCGUGGUacGGGU-CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 230327 0.66 0.863764
Target:  5'- gGGGGCCA-CGCCAUcCCCGccGGCGCAu -3'
miRNA:   3'- -UUCCGGUcGUGGUAcGGGU--CUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 224534 0.66 0.859287
Target:  5'- cGGGCCgguaGGCACCccggcGCCCAGcaggaaccagcggcaGCGCAGc -3'
miRNA:   3'- uUCCGG----UCGUGGua---CGGGUC---------------UGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 196771 0.66 0.856262
Target:  5'- -cGGCCGGCGCgA--CCgCGGGCGCGGu -3'
miRNA:   3'- uuCCGGUCGUGgUacGG-GUCUGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.