miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 172425 0.66 0.965708
Target:  5'- -gGGACCCGag-GCGGAggAGGAAGa -3'
miRNA:   3'- caUCUGGGCgcaCGUCUggUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 177180 0.66 0.965708
Target:  5'- -cGGGCacgggguugCGCGUGCGGuacuucuCCAGGcGGCg -3'
miRNA:   3'- caUCUGg--------GCGCACGUCu------GGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 195616 0.66 0.964437
Target:  5'- --cGGCCCGCcagcuggucgcguuGcUGCAGcuccgagGCCAGGGAGUc -3'
miRNA:   3'- cauCUGGGCG--------------C-ACGUC-------UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 221650 0.66 0.96379
Target:  5'- ---cGCCCGCGguguaGcCAGGCCucucuuucgguggucGGGAGGCa -3'
miRNA:   3'- caucUGGGCGCa----C-GUCUGG---------------UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 129842 0.66 0.963463
Target:  5'- -gGGGCCCGUGgccgugcccugcuacUGCGacgagugggugacGGCCGGGGAGg -3'
miRNA:   3'- caUCUGGGCGC---------------ACGU-------------CUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 150773 0.66 0.962471
Target:  5'- uGUGcGCUCGCGcgacgacggGCGGgcgcgagccGCCAGGggGCg -3'
miRNA:   3'- -CAUcUGGGCGCa--------CGUC---------UGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 45734 0.66 0.962471
Target:  5'- -gGGACgCGgGU-CAGGCCGGGuuuuguAGCg -3'
miRNA:   3'- caUCUGgGCgCAcGUCUGGUCCu-----UCG- -5'
14605 3' -55.9 NC_003521.1 + 100967 0.66 0.962471
Target:  5'- --cGACCCGCaguucGUGCAGAUCAac-AGCu -3'
miRNA:   3'- cauCUGGGCG-----CACGUCUGGUccuUCG- -5'
14605 3' -55.9 NC_003521.1 + 6818 0.66 0.962471
Target:  5'- -cGGAgCCGauc-CAGACCAGGAGGg -3'
miRNA:   3'- caUCUgGGCgcacGUCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 180891 0.66 0.962136
Target:  5'- --uGAUCgGCGUccacgucGgAGACCAGGAAGg -3'
miRNA:   3'- cauCUGGgCGCA-------CgUCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 7982 0.66 0.962136
Target:  5'- -aGGGUCCGCGgcgGCGGgggagguACCGGGGcAGCg -3'
miRNA:   3'- caUCUGGGCGCa--CGUC-------UGGUCCU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 104238 0.66 0.962136
Target:  5'- cGUGGAgCUGCGcgagcUGCAGGCCuuccucgAGGAgaacuucaAGCa -3'
miRNA:   3'- -CAUCUgGGCGC-----ACGUCUGG-------UCCU--------UCG- -5'
14605 3' -55.9 NC_003521.1 + 110336 0.66 0.961799
Target:  5'- -aAGGCCaCGCGUGacaggucgccgaAGAgCAGGAGcGCu -3'
miRNA:   3'- caUCUGG-GCGCACg-----------UCUgGUCCUU-CG- -5'
14605 3' -55.9 NC_003521.1 + 124918 0.66 0.96043
Target:  5'- -gGGGCCCGUGUucagcacgguguacaGCAGuCCGuGGGugGGCa -3'
miRNA:   3'- caUCUGGGCGCA---------------CGUCuGGU-CCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 234981 0.66 0.959028
Target:  5'- -gAGGCCUaCGUGCGGucCCAGcGGuAGCg -3'
miRNA:   3'- caUCUGGGcGCACGUCu-GGUC-CU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 91853 0.66 0.959028
Target:  5'- ----cCCCuccaggGCG-GCGGACCAGGAcGGCg -3'
miRNA:   3'- caucuGGG------CGCaCGUCUGGUCCU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 66654 0.66 0.959028
Target:  5'- --cGACCuucgugCGCGgccUGCAGGCCcuGGAGCg -3'
miRNA:   3'- cauCUGG------GCGC---ACGUCUGGucCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 173229 0.66 0.959028
Target:  5'- aGUAGcuuGCCCGCGUGUuggcgacucuGGCCcGcGggGCc -3'
miRNA:   3'- -CAUC---UGGGCGCACGu---------CUGGuC-CuuCG- -5'
14605 3' -55.9 NC_003521.1 + 80039 0.66 0.959028
Target:  5'- -aAGACCCGCGcccGCGuGCCGccGGcGGCa -3'
miRNA:   3'- caUCUGGGCGCa--CGUcUGGU--CCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 87753 0.66 0.959028
Target:  5'- -gAGACCagcuGCGgacagguggcGCAGGCCAGGGccaGGUg -3'
miRNA:   3'- caUCUGGg---CGCa---------CGUCUGGUCCU---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.