Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 172425 | 0.66 | 0.965708 |
Target: 5'- -gGGACCCGag-GCGGAggAGGAAGa -3' miRNA: 3'- caUCUGGGCgcaCGUCUggUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 177180 | 0.66 | 0.965708 |
Target: 5'- -cGGGCacgggguugCGCGUGCGGuacuucuCCAGGcGGCg -3' miRNA: 3'- caUCUGg--------GCGCACGUCu------GGUCCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 195616 | 0.66 | 0.964437 |
Target: 5'- --cGGCCCGCcagcuggucgcguuGcUGCAGcuccgagGCCAGGGAGUc -3' miRNA: 3'- cauCUGGGCG--------------C-ACGUC-------UGGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 221650 | 0.66 | 0.96379 |
Target: 5'- ---cGCCCGCGguguaGcCAGGCCucucuuucgguggucGGGAGGCa -3' miRNA: 3'- caucUGGGCGCa----C-GUCUGG---------------UCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 129842 | 0.66 | 0.963463 |
Target: 5'- -gGGGCCCGUGgccgugcccugcuacUGCGacgagugggugacGGCCGGGGAGg -3' miRNA: 3'- caUCUGGGCGC---------------ACGU-------------CUGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 6818 | 0.66 | 0.962471 |
Target: 5'- -cGGAgCCGauc-CAGACCAGGAGGg -3' miRNA: 3'- caUCUgGGCgcacGUCUGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 100967 | 0.66 | 0.962471 |
Target: 5'- --cGACCCGCaguucGUGCAGAUCAac-AGCu -3' miRNA: 3'- cauCUGGGCG-----CACGUCUGGUccuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 150773 | 0.66 | 0.962471 |
Target: 5'- uGUGcGCUCGCGcgacgacggGCGGgcgcgagccGCCAGGggGCg -3' miRNA: 3'- -CAUcUGGGCGCa--------CGUC---------UGGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 45734 | 0.66 | 0.962471 |
Target: 5'- -gGGACgCGgGU-CAGGCCGGGuuuuguAGCg -3' miRNA: 3'- caUCUGgGCgCAcGUCUGGUCCu-----UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 104238 | 0.66 | 0.962136 |
Target: 5'- cGUGGAgCUGCGcgagcUGCAGGCCuuccucgAGGAgaacuucaAGCa -3' miRNA: 3'- -CAUCUgGGCGC-----ACGUCUGG-------UCCU--------UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 180891 | 0.66 | 0.962136 |
Target: 5'- --uGAUCgGCGUccacgucGgAGACCAGGAAGg -3' miRNA: 3'- cauCUGGgCGCA-------CgUCUGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 7982 | 0.66 | 0.962136 |
Target: 5'- -aGGGUCCGCGgcgGCGGgggagguACCGGGGcAGCg -3' miRNA: 3'- caUCUGGGCGCa--CGUC-------UGGUCCU-UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 110336 | 0.66 | 0.961799 |
Target: 5'- -aAGGCCaCGCGUGacaggucgccgaAGAgCAGGAGcGCu -3' miRNA: 3'- caUCUGG-GCGCACg-----------UCUgGUCCUU-CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 124918 | 0.66 | 0.96043 |
Target: 5'- -gGGGCCCGUGUucagcacgguguacaGCAGuCCGuGGGugGGCa -3' miRNA: 3'- caUCUGGGCGCA---------------CGUCuGGU-CCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 66654 | 0.66 | 0.959028 |
Target: 5'- --cGACCuucgugCGCGgccUGCAGGCCcuGGAGCg -3' miRNA: 3'- cauCUGG------GCGC---ACGUCUGGucCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 87753 | 0.66 | 0.959028 |
Target: 5'- -gAGACCagcuGCGgacagguggcGCAGGCCAGGGccaGGUg -3' miRNA: 3'- caUCUGGg---CGCa---------CGUCUGGUCCU---UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 91853 | 0.66 | 0.959028 |
Target: 5'- ----cCCCuccaggGCG-GCGGACCAGGAcGGCg -3' miRNA: 3'- caucuGGG------CGCaCGUCUGGUCCU-UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 234981 | 0.66 | 0.959028 |
Target: 5'- -gAGGCCUaCGUGCGGucCCAGcGGuAGCg -3' miRNA: 3'- caUCUGGGcGCACGUCu-GGUC-CU-UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 80039 | 0.66 | 0.959028 |
Target: 5'- -aAGACCCGCGcccGCGuGCCGccGGcGGCa -3' miRNA: 3'- caUCUGGGCGCa--CGUcUGGU--CCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 173229 | 0.66 | 0.959028 |
Target: 5'- aGUAGcuuGCCCGCGUGUuggcgacucuGGCCcGcGggGCc -3' miRNA: 3'- -CAUC---UGGGCGCACGu---------CUGGuC-CuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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