miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 3' -56.5 NC_003521.1 + 125844 0.66 0.960574
Target:  5'- gCUCGCgGUGGucguacagcGCCUugGUGGCCGCGu -3'
miRNA:   3'- aGAGUGgCGUCuu-------UGGG--CACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 141127 0.66 0.960574
Target:  5'- cUUCugCGCccgcGAcACCUGUuucGGCCGCGa -3'
miRNA:   3'- aGAGugGCGu---CUuUGGGCA---CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 108958 0.66 0.957052
Target:  5'- --gCGCgGCAcGAuGgCCGUGGCCGCc -3'
miRNA:   3'- agaGUGgCGU-CUuUgGGCACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 217358 0.66 0.957052
Target:  5'- -aUCACCGUAGuagucCCCGUaccagauggcGGUCGCGu -3'
miRNA:   3'- agAGUGGCGUCuuu--GGGCA----------CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 174826 0.66 0.957052
Target:  5'- uUCUC-CaGCAGcGACUugguguccggCGUGGCCACGu -3'
miRNA:   3'- -AGAGuGgCGUCuUUGG----------GCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 119245 0.66 0.957052
Target:  5'- gCUCGCUGgAGAAcacGCgCGUGGUCAa- -3'
miRNA:   3'- aGAGUGGCgUCUU---UGgGCACCGGUgc -5'
14606 3' -56.5 NC_003521.1 + 80540 0.66 0.957052
Target:  5'- cCUUGCCgGCGG-AGCCCa-GGCCGCu -3'
miRNA:   3'- aGAGUGG-CGUCuUUGGGcaCCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 161573 0.66 0.957052
Target:  5'- aCUCGCCGgAG-AACgUGUcGCCGCGc -3'
miRNA:   3'- aGAGUGGCgUCuUUGgGCAcCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 203392 0.66 0.957052
Target:  5'- -gUCACCuuCAGAGGCUCG-GcGCCGCGc -3'
miRNA:   3'- agAGUGGc-GUCUUUGGGCaC-CGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 37694 0.66 0.957052
Target:  5'- aUCUCGgcuccggcUCGCAGAGugCCuuUGGCCAgGc -3'
miRNA:   3'- -AGAGU--------GGCGUCUUugGGc-ACCGGUgC- -5'
14606 3' -56.5 NC_003521.1 + 152193 0.66 0.957052
Target:  5'- cCUCGCUggGCuGuGACCCGgacgaGGUCACGg -3'
miRNA:   3'- aGAGUGG--CGuCuUUGGGCa----CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 75234 0.66 0.956689
Target:  5'- aUCUCACCgucacuuaggcugGCAGAcGCUgaGUGGCCGu- -3'
miRNA:   3'- -AGAGUGG-------------CGUCUuUGGg-CACCGGUgc -5'
14606 3' -56.5 NC_003521.1 + 129673 0.66 0.953322
Target:  5'- --gCGCUauGCGGAccguCCCGUGGCCccaGCGg -3'
miRNA:   3'- agaGUGG--CGUCUuu--GGGCACCGG---UGC- -5'
14606 3' -56.5 NC_003521.1 + 72341 0.66 0.953322
Target:  5'- gUCUCGCCGCccauGAucGACCUGaccaGCCACc -3'
miRNA:   3'- -AGAGUGGCGu---CU--UUGGGCac--CGGUGc -5'
14606 3' -56.5 NC_003521.1 + 217486 0.66 0.953322
Target:  5'- --aCACaGCAGGAacgugcaggugGCCUGcaUGGCCACGg -3'
miRNA:   3'- agaGUGgCGUCUU-----------UGGGC--ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 91603 0.66 0.953322
Target:  5'- --gCGCCGCAGcuuCuuGUGGgCCugGg -3'
miRNA:   3'- agaGUGGCGUCuuuGggCACC-GGugC- -5'
14606 3' -56.5 NC_003521.1 + 113634 0.66 0.953322
Target:  5'- --aCGCUGCAGAAggucuucuACCUGUgccucaugccGGCCAUGa -3'
miRNA:   3'- agaGUGGCGUCUU--------UGGGCA----------CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 22186 0.66 0.953322
Target:  5'- --gCGCCGCcGG---CCGUGGCCGCu -3'
miRNA:   3'- agaGUGGCGuCUuugGGCACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 146418 0.66 0.953322
Target:  5'- --cCGCCGCGucAACCUGcgcGGCUACGa -3'
miRNA:   3'- agaGUGGCGUcuUUGGGCa--CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 223324 0.66 0.953322
Target:  5'- gCUCgucgcgcuGCCGCAGAuagguGCCCcaGGCCuCGg -3'
miRNA:   3'- aGAG--------UGGCGUCUu----UGGGcaCCGGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.