Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14606 | 3' | -56.5 | NC_003521.1 | + | 125844 | 0.66 | 0.960574 |
Target: 5'- gCUCGCgGUGGucguacagcGCCUugGUGGCCGCGu -3' miRNA: 3'- aGAGUGgCGUCuu-------UGGG--CACCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 141127 | 0.66 | 0.960574 |
Target: 5'- cUUCugCGCccgcGAcACCUGUuucGGCCGCGa -3' miRNA: 3'- aGAGugGCGu---CUuUGGGCA---CCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 152193 | 0.66 | 0.957052 |
Target: 5'- cCUCGCUggGCuGuGACCCGgacgaGGUCACGg -3' miRNA: 3'- aGAGUGG--CGuCuUUGGGCa----CCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 203392 | 0.66 | 0.957052 |
Target: 5'- -gUCACCuuCAGAGGCUCG-GcGCCGCGc -3' miRNA: 3'- agAGUGGc-GUCUUUGGGCaC-CGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 161573 | 0.66 | 0.957052 |
Target: 5'- aCUCGCCGgAG-AACgUGUcGCCGCGc -3' miRNA: 3'- aGAGUGGCgUCuUUGgGCAcCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 80540 | 0.66 | 0.957052 |
Target: 5'- cCUUGCCgGCGG-AGCCCa-GGCCGCu -3' miRNA: 3'- aGAGUGG-CGUCuUUGGGcaCCGGUGc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 119245 | 0.66 | 0.957052 |
Target: 5'- gCUCGCUGgAGAAcacGCgCGUGGUCAa- -3' miRNA: 3'- aGAGUGGCgUCUU---UGgGCACCGGUgc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 37694 | 0.66 | 0.957052 |
Target: 5'- aUCUCGgcuccggcUCGCAGAGugCCuuUGGCCAgGc -3' miRNA: 3'- -AGAGU--------GGCGUCUUugGGc-ACCGGUgC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 108958 | 0.66 | 0.957052 |
Target: 5'- --gCGCgGCAcGAuGgCCGUGGCCGCc -3' miRNA: 3'- agaGUGgCGU-CUuUgGGCACCGGUGc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 174826 | 0.66 | 0.957052 |
Target: 5'- uUCUC-CaGCAGcGACUugguguccggCGUGGCCACGu -3' miRNA: 3'- -AGAGuGgCGUCuUUGG----------GCACCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 217358 | 0.66 | 0.957052 |
Target: 5'- -aUCACCGUAGuagucCCCGUaccagauggcGGUCGCGu -3' miRNA: 3'- agAGUGGCGUCuuu--GGGCA----------CCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 75234 | 0.66 | 0.956689 |
Target: 5'- aUCUCACCgucacuuaggcugGCAGAcGCUgaGUGGCCGu- -3' miRNA: 3'- -AGAGUGG-------------CGUCUuUGGg-CACCGGUgc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 174504 | 0.66 | 0.953322 |
Target: 5'- ---gACUGCAG-GGCCgCGaUGGCCGCGc -3' miRNA: 3'- agagUGGCGUCuUUGG-GC-ACCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 217486 | 0.66 | 0.953322 |
Target: 5'- --aCACaGCAGGAacgugcaggugGCCUGcaUGGCCACGg -3' miRNA: 3'- agaGUGgCGUCUU-----------UGGGC--ACCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 129673 | 0.66 | 0.953322 |
Target: 5'- --gCGCUauGCGGAccguCCCGUGGCCccaGCGg -3' miRNA: 3'- agaGUGG--CGUCUuu--GGGCACCGG---UGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 72341 | 0.66 | 0.953322 |
Target: 5'- gUCUCGCCGCccauGAucGACCUGaccaGCCACc -3' miRNA: 3'- -AGAGUGGCGu---CU--UUGGGCac--CGGUGc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 22186 | 0.66 | 0.953322 |
Target: 5'- --gCGCCGCcGG---CCGUGGCCGCu -3' miRNA: 3'- agaGUGGCGuCUuugGGCACCGGUGc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 113634 | 0.66 | 0.953322 |
Target: 5'- --aCGCUGCAGAAggucuucuACCUGUgccucaugccGGCCAUGa -3' miRNA: 3'- agaGUGGCGUCUU--------UGGGCA----------CCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 91603 | 0.66 | 0.953322 |
Target: 5'- --gCGCCGCAGcuuCuuGUGGgCCugGg -3' miRNA: 3'- agaGUGGCGUCuuuGggCACC-GGugC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 146418 | 0.66 | 0.953322 |
Target: 5'- --cCGCCGCGucAACCUGcgcGGCUACGa -3' miRNA: 3'- agaGUGGCGUcuUUGGGCa--CCGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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