miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 54440 0.66 0.995347
Target:  5'- cUGACG-CGguUGUUGGCGGUGAAuuccagcucgcuGCCGu -3'
miRNA:   3'- -ACUGCaGU--ACAGUCGCCGCUU------------UGGCu -5'
14607 3' -52.8 NC_003521.1 + 168536 0.66 0.995347
Target:  5'- cUGGCGgcCAgcgCGGCGGCGgcGCUGGc -3'
miRNA:   3'- -ACUGCa-GUacaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 86315 0.66 0.995347
Target:  5'- gGGCGUgAUucuggcacGUCAGCcggguGGUGAGGCCGu -3'
miRNA:   3'- aCUGCAgUA--------CAGUCG-----CCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 132433 0.66 0.995347
Target:  5'- cGGgGUCggGUUAGCGuGCGgcGCCu- -3'
miRNA:   3'- aCUgCAGuaCAGUCGC-CGCuuUGGcu -5'
14607 3' -52.8 NC_003521.1 + 140718 0.66 0.994695
Target:  5'- aGaACGUCAUcccgcgcgaguccucGUCGGCGGuCGAGgcgcccgccuccguGCCGGg -3'
miRNA:   3'- aC-UGCAGUA---------------CAGUCGCC-GCUU--------------UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 108132 0.66 0.994618
Target:  5'- -cGCGUCccGcCAGCcgGGCGcGAGCCGAu -3'
miRNA:   3'- acUGCAGuaCaGUCG--CCGC-UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 218191 0.66 0.994618
Target:  5'- aGACGUaCAUGgu-GCGGUGGGugucCCGGg -3'
miRNA:   3'- aCUGCA-GUACaguCGCCGCUUu---GGCU- -5'
14607 3' -52.8 NC_003521.1 + 28084 0.66 0.994618
Target:  5'- gGACGa-----CGGCGGgGAAGCCGAg -3'
miRNA:   3'- aCUGCaguacaGUCGCCgCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 149739 0.66 0.994618
Target:  5'- cGACGaguggCAgGUCuucuGCGGCGAGGgCGGc -3'
miRNA:   3'- aCUGCa----GUaCAGu---CGCCGCUUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 228026 0.66 0.993799
Target:  5'- -cACGUCuucggcauUGUCGGUGGCGuuAAGCgGAg -3'
miRNA:   3'- acUGCAGu-------ACAGUCGCCGC--UUUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 120369 0.66 0.993799
Target:  5'- gGACGUCGcUGUauuauuuGCGGCGGAcgCGAg -3'
miRNA:   3'- aCUGCAGU-ACAgu-----CGCCGCUUugGCU- -5'
14607 3' -52.8 NC_003521.1 + 104263 0.66 0.993799
Target:  5'- -aGCGgCAgcugccaGUCGGCGGCGAAGCgCGc -3'
miRNA:   3'- acUGCaGUa------CAGUCGCCGCUUUG-GCu -5'
14607 3' -52.8 NC_003521.1 + 226164 0.66 0.993799
Target:  5'- cGGCGUCGU-UCAGCGcGCaGAAggGCCa- -3'
miRNA:   3'- aCUGCAGUAcAGUCGC-CG-CUU--UGGcu -5'
14607 3' -52.8 NC_003521.1 + 17481 0.66 0.993799
Target:  5'- cGACGgcaCcgG-UAGCGGCGccGCCGGu -3'
miRNA:   3'- aCUGCa--GuaCaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 212092 0.66 0.993799
Target:  5'- -cGCGUCugguUGUCGGCGuGCGccACCa- -3'
miRNA:   3'- acUGCAGu---ACAGUCGC-CGCuuUGGcu -5'
14607 3' -52.8 NC_003521.1 + 123526 0.66 0.992884
Target:  5'- --cCGUCGUGgggCAGCGugaGgGGAGCCGGc -3'
miRNA:   3'- acuGCAGUACa--GUCGC---CgCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 178856 0.66 0.992884
Target:  5'- cGACGggaaaGUCAGCGggcaguagaGCGAGGCCGc -3'
miRNA:   3'- aCUGCagua-CAGUCGC---------CGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 1069 0.66 0.992884
Target:  5'- cGACcgacCA--UCGGCgGGCGAGGCCGAa -3'
miRNA:   3'- aCUGca--GUacAGUCG-CCGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 6081 0.66 0.992884
Target:  5'- cGACGgCcgGUgCGGCGGCGuu-CCGc -3'
miRNA:   3'- aCUGCaGuaCA-GUCGCCGCuuuGGCu -5'
14607 3' -52.8 NC_003521.1 + 61590 0.66 0.992884
Target:  5'- aGGCGcCAgaagGcCcGCGGCGGGACCa- -3'
miRNA:   3'- aCUGCaGUa---CaGuCGCCGCUUUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.