Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14607 | 3' | -52.8 | NC_003521.1 | + | 54440 | 0.66 | 0.995347 |
Target: 5'- cUGACG-CGguUGUUGGCGGUGAAuuccagcucgcuGCCGu -3' miRNA: 3'- -ACUGCaGU--ACAGUCGCCGCUU------------UGGCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 168536 | 0.66 | 0.995347 |
Target: 5'- cUGGCGgcCAgcgCGGCGGCGgcGCUGGc -3' miRNA: 3'- -ACUGCa-GUacaGUCGCCGCuuUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 86315 | 0.66 | 0.995347 |
Target: 5'- gGGCGUgAUucuggcacGUCAGCcggguGGUGAGGCCGu -3' miRNA: 3'- aCUGCAgUA--------CAGUCG-----CCGCUUUGGCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 132433 | 0.66 | 0.995347 |
Target: 5'- cGGgGUCggGUUAGCGuGCGgcGCCu- -3' miRNA: 3'- aCUgCAGuaCAGUCGC-CGCuuUGGcu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 140718 | 0.66 | 0.994695 |
Target: 5'- aGaACGUCAUcccgcgcgaguccucGUCGGCGGuCGAGgcgcccgccuccguGCCGGg -3' miRNA: 3'- aC-UGCAGUA---------------CAGUCGCC-GCUU--------------UGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 108132 | 0.66 | 0.994618 |
Target: 5'- -cGCGUCccGcCAGCcgGGCGcGAGCCGAu -3' miRNA: 3'- acUGCAGuaCaGUCG--CCGC-UUUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 218191 | 0.66 | 0.994618 |
Target: 5'- aGACGUaCAUGgu-GCGGUGGGugucCCGGg -3' miRNA: 3'- aCUGCA-GUACaguCGCCGCUUu---GGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 28084 | 0.66 | 0.994618 |
Target: 5'- gGACGa-----CGGCGGgGAAGCCGAg -3' miRNA: 3'- aCUGCaguacaGUCGCCgCUUUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 149739 | 0.66 | 0.994618 |
Target: 5'- cGACGaguggCAgGUCuucuGCGGCGAGGgCGGc -3' miRNA: 3'- aCUGCa----GUaCAGu---CGCCGCUUUgGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 228026 | 0.66 | 0.993799 |
Target: 5'- -cACGUCuucggcauUGUCGGUGGCGuuAAGCgGAg -3' miRNA: 3'- acUGCAGu-------ACAGUCGCCGC--UUUGgCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 120369 | 0.66 | 0.993799 |
Target: 5'- gGACGUCGcUGUauuauuuGCGGCGGAcgCGAg -3' miRNA: 3'- aCUGCAGU-ACAgu-----CGCCGCUUugGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 104263 | 0.66 | 0.993799 |
Target: 5'- -aGCGgCAgcugccaGUCGGCGGCGAAGCgCGc -3' miRNA: 3'- acUGCaGUa------CAGUCGCCGCUUUG-GCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 226164 | 0.66 | 0.993799 |
Target: 5'- cGGCGUCGU-UCAGCGcGCaGAAggGCCa- -3' miRNA: 3'- aCUGCAGUAcAGUCGC-CG-CUU--UGGcu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 17481 | 0.66 | 0.993799 |
Target: 5'- cGACGgcaCcgG-UAGCGGCGccGCCGGu -3' miRNA: 3'- aCUGCa--GuaCaGUCGCCGCuuUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 212092 | 0.66 | 0.993799 |
Target: 5'- -cGCGUCugguUGUCGGCGuGCGccACCa- -3' miRNA: 3'- acUGCAGu---ACAGUCGC-CGCuuUGGcu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 123526 | 0.66 | 0.992884 |
Target: 5'- --cCGUCGUGgggCAGCGugaGgGGAGCCGGc -3' miRNA: 3'- acuGCAGUACa--GUCGC---CgCUUUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 178856 | 0.66 | 0.992884 |
Target: 5'- cGACGggaaaGUCAGCGggcaguagaGCGAGGCCGc -3' miRNA: 3'- aCUGCagua-CAGUCGC---------CGCUUUGGCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 1069 | 0.66 | 0.992884 |
Target: 5'- cGACcgacCA--UCGGCgGGCGAGGCCGAa -3' miRNA: 3'- aCUGca--GUacAGUCG-CCGCUUUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 6081 | 0.66 | 0.992884 |
Target: 5'- cGACGgCcgGUgCGGCGGCGuu-CCGc -3' miRNA: 3'- aCUGCaGuaCA-GUCGCCGCuuuGGCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 61590 | 0.66 | 0.992884 |
Target: 5'- aGGCGcCAgaagGcCcGCGGCGGGACCa- -3' miRNA: 3'- aCUGCaGUa---CaGuCGCCGCUUUGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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