miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 4381 0.66 0.826016
Target:  5'- gCGUCcCGCUCGCUCACUcacccGCUCguGg -3'
miRNA:   3'- -GCGGcGCGAGCGGGUGAu----CGAGguCg -5'
14607 5' -60.9 NC_003521.1 + 206301 0.66 0.826016
Target:  5'- cCGCuCGCGCgucUCgGCCCGCggccGCUaCCuGCg -3'
miRNA:   3'- -GCG-GCGCG---AG-CGGGUGau--CGA-GGuCG- -5'
14607 5' -60.9 NC_003521.1 + 62148 0.66 0.826016
Target:  5'- gGCCGCGaccaCCCGgU-GUUCCAGCg -3'
miRNA:   3'- gCGGCGCgagcGGGUgAuCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 149406 0.66 0.826016
Target:  5'- gCGCaUGCGCacggUCGCCCugUGGg-CCGGg -3'
miRNA:   3'- -GCG-GCGCG----AGCGGGugAUCgaGGUCg -5'
14607 5' -60.9 NC_003521.1 + 222652 0.66 0.826016
Target:  5'- aGgCGCGCagCGCCUccacGCU-GC-CCAGCa -3'
miRNA:   3'- gCgGCGCGa-GCGGG----UGAuCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 133112 0.66 0.826016
Target:  5'- aGCCGCcCUCG-CCAC-AGC-CaCAGCa -3'
miRNA:   3'- gCGGCGcGAGCgGGUGaUCGaG-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 137763 0.66 0.826016
Target:  5'- uCGcCCGCGCaccCGCCCugU--CUgCAGCa -3'
miRNA:   3'- -GC-GGCGCGa--GCGGGugAucGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 234428 0.66 0.826016
Target:  5'- -cCCGuCGC-CGCCgCGgUAGCUgCGGCg -3'
miRNA:   3'- gcGGC-GCGaGCGG-GUgAUCGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 170458 0.66 0.826016
Target:  5'- -cUCGCGCcccagucaugUCGCCgACUAGCg-CGGCg -3'
miRNA:   3'- gcGGCGCG----------AGCGGgUGAUCGagGUCG- -5'
14607 5' -60.9 NC_003521.1 + 139176 0.66 0.826016
Target:  5'- uCGagaCGCGCUCGCUgaACgugacgcGCUaCCAGCg -3'
miRNA:   3'- -GCg--GCGCGAGCGGg-UGau-----CGA-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 171195 0.66 0.826016
Target:  5'- aCGCCGaGCUgGUgCACUGcucGCUCUgcGGCa -3'
miRNA:   3'- -GCGGCgCGAgCGgGUGAU---CGAGG--UCG- -5'
14607 5' -60.9 NC_003521.1 + 36545 0.66 0.826016
Target:  5'- gCGCCGaGCUCuucuuCCUGCUGuGCUCCAccaGCg -3'
miRNA:   3'- -GCGGCgCGAGc----GGGUGAU-CGAGGU---CG- -5'
14607 5' -60.9 NC_003521.1 + 131227 0.66 0.826016
Target:  5'- gGCCuGUGCUCGCUgGCcgAGCU--GGCg -3'
miRNA:   3'- gCGG-CGCGAGCGGgUGa-UCGAggUCG- -5'
14607 5' -60.9 NC_003521.1 + 24717 0.66 0.826016
Target:  5'- gCGCCGCGCUCaaccaguucauGCUCAUcaacaccgugUGGUUCgCGGUc -3'
miRNA:   3'- -GCGGCGCGAG-----------CGGGUG----------AUCGAG-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 71989 0.66 0.826016
Target:  5'- cCGUgaCGCGCa-GCUCGCUggGGC-CCAGCu -3'
miRNA:   3'- -GCG--GCGCGagCGGGUGA--UCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 161308 0.66 0.826016
Target:  5'- uGCUuucCGCU-GCCCACcagcaagcGCUCCGGCg -3'
miRNA:   3'- gCGGc--GCGAgCGGGUGau------CGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 91910 0.66 0.826016
Target:  5'- uGCgGUGCUCGaugCCGCggcggcGCUCCucGGCg -3'
miRNA:   3'- gCGgCGCGAGCg--GGUGau----CGAGG--UCG- -5'
14607 5' -60.9 NC_003521.1 + 233405 0.66 0.826016
Target:  5'- uGCCGUcucgGCUCcuggcCCCGgUGGCUCCgacGGCc -3'
miRNA:   3'- gCGGCG----CGAGc----GGGUgAUCGAGG---UCG- -5'
14607 5' -60.9 NC_003521.1 + 12395 0.66 0.826016
Target:  5'- aCGCCGaGUUCGUgCUGCUGGCUgaCCGGg -3'
miRNA:   3'- -GCGGCgCGAGCG-GGUGAUCGA--GGUCg -5'
14607 5' -60.9 NC_003521.1 + 141839 0.66 0.826016
Target:  5'- -cCUGCGacgCGCCUAC-GGCUcCCGGCa -3'
miRNA:   3'- gcGGCGCga-GCGGGUGaUCGA-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.