Results 1 - 20 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14607 | 5' | -60.9 | NC_003521.1 | + | 24717 | 0.66 | 0.826016 |
Target: 5'- gCGCCGCGCUCaaccaguucauGCUCAUcaacaccgugUGGUUCgCGGUc -3' miRNA: 3'- -GCGGCGCGAG-----------CGGGUG----------AUCGAG-GUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 232398 | 0.66 | 0.826016 |
Target: 5'- gCGCUG-GCUgCGCCUGCggcacGGCaacgCCAGCg -3' miRNA: 3'- -GCGGCgCGA-GCGGGUGa----UCGa---GGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 170458 | 0.66 | 0.826016 |
Target: 5'- -cUCGCGCcccagucaugUCGCCgACUAGCg-CGGCg -3' miRNA: 3'- gcGGCGCG----------AGCGGgUGAUCGagGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 234428 | 0.66 | 0.826016 |
Target: 5'- -cCCGuCGC-CGCCgCGgUAGCUgCGGCg -3' miRNA: 3'- gcGGC-GCGaGCGG-GUgAUCGAgGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 137763 | 0.66 | 0.826016 |
Target: 5'- uCGcCCGCGCaccCGCCCugU--CUgCAGCa -3' miRNA: 3'- -GC-GGCGCGa--GCGGGugAucGAgGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 133112 | 0.66 | 0.826016 |
Target: 5'- aGCCGCcCUCG-CCAC-AGC-CaCAGCa -3' miRNA: 3'- gCGGCGcGAGCgGGUGaUCGaG-GUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 4381 | 0.66 | 0.826016 |
Target: 5'- gCGUCcCGCUCGCUCACUcacccGCUCguGg -3' miRNA: 3'- -GCGGcGCGAGCGGGUGAu----CGAGguCg -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 149406 | 0.66 | 0.826016 |
Target: 5'- gCGCaUGCGCacggUCGCCCugUGGg-CCGGg -3' miRNA: 3'- -GCG-GCGCG----AGCGGGugAUCgaGGUCg -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 131227 | 0.66 | 0.826016 |
Target: 5'- gGCCuGUGCUCGCUgGCcgAGCU--GGCg -3' miRNA: 3'- gCGG-CGCGAGCGGgUGa-UCGAggUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 206301 | 0.66 | 0.826016 |
Target: 5'- cCGCuCGCGCgucUCgGCCCGCggccGCUaCCuGCg -3' miRNA: 3'- -GCG-GCGCG---AG-CGGGUGau--CGA-GGuCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 139176 | 0.66 | 0.826016 |
Target: 5'- uCGagaCGCGCUCGCUgaACgugacgcGCUaCCAGCg -3' miRNA: 3'- -GCg--GCGCGAGCGGg-UGau-----CGA-GGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 222652 | 0.66 | 0.826016 |
Target: 5'- aGgCGCGCagCGCCUccacGCU-GC-CCAGCa -3' miRNA: 3'- gCgGCGCGa-GCGGG----UGAuCGaGGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 36545 | 0.66 | 0.826016 |
Target: 5'- gCGCCGaGCUCuucuuCCUGCUGuGCUCCAccaGCg -3' miRNA: 3'- -GCGGCgCGAGc----GGGUGAU-CGAGGU---CG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 141839 | 0.66 | 0.826016 |
Target: 5'- -cCUGCGacgCGCCUAC-GGCUcCCGGCa -3' miRNA: 3'- gcGGCGCga-GCGGGUGaUCGA-GGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 62148 | 0.66 | 0.826016 |
Target: 5'- gGCCGCGaccaCCCGgU-GUUCCAGCg -3' miRNA: 3'- gCGGCGCgagcGGGUgAuCGAGGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 233405 | 0.66 | 0.826016 |
Target: 5'- uGCCGUcucgGCUCcuggcCCCGgUGGCUCCgacGGCc -3' miRNA: 3'- gCGGCG----CGAGc----GGGUgAUCGAGG---UCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 91910 | 0.66 | 0.826016 |
Target: 5'- uGCgGUGCUCGaugCCGCggcggcGCUCCucGGCg -3' miRNA: 3'- gCGgCGCGAGCg--GGUGau----CGAGG--UCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 161308 | 0.66 | 0.826016 |
Target: 5'- uGCUuucCGCU-GCCCACcagcaagcGCUCCGGCg -3' miRNA: 3'- gCGGc--GCGAgCGGGUGau------CGAGGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 71989 | 0.66 | 0.826016 |
Target: 5'- cCGUgaCGCGCa-GCUCGCUggGGC-CCAGCu -3' miRNA: 3'- -GCG--GCGCGagCGGGUGA--UCGaGGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 171195 | 0.66 | 0.826016 |
Target: 5'- aCGCCGaGCUgGUgCACUGcucGCUCUgcGGCa -3' miRNA: 3'- -GCGGCgCGAgCGgGUGAU---CGAGG--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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