Results 1 - 20 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14609 | 3' | -59.6 | NC_003521.1 | + | 5509 | 0.66 | 0.911556 |
Target: 5'- -aGAgGCGGuguagccgucgcauCUGUCGUCGCCaGUUGg -3' miRNA: 3'- cgCUgCGCCu-------------GGCAGCAGCGG-CAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 197126 | 0.66 | 0.909329 |
Target: 5'- gGgGugGgGG-UCGUUGUCGUCGUCu- -3' miRNA: 3'- -CgCugCgCCuGGCAGCAGCGGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 127068 | 0.66 | 0.909329 |
Target: 5'- -nGACGCGGcCUGUCGgucaGCCGcCa- -3' miRNA: 3'- cgCUGCGCCuGGCAGCag--CGGCaGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 47932 | 0.66 | 0.909329 |
Target: 5'- cGCGcUGCuGAUCGUCaacCGCCGUCGc -3' miRNA: 3'- -CGCuGCGcCUGGCAGca-GCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 18858 | 0.66 | 0.909329 |
Target: 5'- uGCGGCGUGGAgCUGUCGUgucaGCUGagcagCGa -3' miRNA: 3'- -CGCUGCGCCU-GGCAGCAg---CGGCa----GCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 167108 | 0.66 | 0.909329 |
Target: 5'- aGCGGuCGCGGcCCGg-GUCGCUG-CGc -3' miRNA: 3'- -CGCU-GCGCCuGGCagCAGCGGCaGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 166575 | 0.66 | 0.909329 |
Target: 5'- aGCGACuccaGGAacCCGUCGUCcaCCGUCa- -3' miRNA: 3'- -CGCUGcg--CCU--GGCAGCAGc-GGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 223336 | 0.66 | 0.909329 |
Target: 5'- cGUGACcgGCGGcGCCGcuacCGgUGCCGUCGUc -3' miRNA: 3'- -CGCUG--CGCC-UGGCa---GCaGCGGCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 100228 | 0.66 | 0.909329 |
Target: 5'- uCGAaGCGGAgCGUC-UCGCCGgccgCGa -3' miRNA: 3'- cGCUgCGCCUgGCAGcAGCGGCa---GCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 221848 | 0.66 | 0.909329 |
Target: 5'- cGCGGCGCGuccucGACCcccuccucGUUGUCGCUGggGUa -3' miRNA: 3'- -CGCUGCGC-----CUGG--------CAGCAGCGGCagCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 142753 | 0.66 | 0.909329 |
Target: 5'- gGCGACGaCGGGgugaccagcguCCG-CGgcggCGUCGUCGg -3' miRNA: 3'- -CGCUGC-GCCU-----------GGCaGCa---GCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 76944 | 0.66 | 0.908768 |
Target: 5'- aGCG-CGCGGugCGUuccagcaUGUCGCgGcCGa -3' miRNA: 3'- -CGCuGCGCCugGCA-------GCAGCGgCaGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 235289 | 0.66 | 0.90362 |
Target: 5'- gGCGGcCGCGccGGCUGcCGUCaCCGUCGc -3' miRNA: 3'- -CGCU-GCGC--CUGGCaGCAGcGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 191090 | 0.66 | 0.90362 |
Target: 5'- gGCGGCgGCGGGCUG-CGUC-UCGUCc- -3' miRNA: 3'- -CGCUG-CGCCUGGCaGCAGcGGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 117252 | 0.66 | 0.903039 |
Target: 5'- gGCGcCGCcGccaucccgccaccGCCGUCGUCGgCCGUgGUg -3' miRNA: 3'- -CGCuGCGcC-------------UGGCAGCAGC-GGCAgCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 75883 | 0.66 | 0.898311 |
Target: 5'- gGCGACGCgagccgccggaggagGGGcCCGguuggucauccucaUCGUCGUCGUCa- -3' miRNA: 3'- -CGCUGCG---------------CCU-GGC--------------AGCAGCGGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 139261 | 0.66 | 0.897711 |
Target: 5'- cGCGGaGCGGGgggaCGaCGaCGCCGUCGUc -3' miRNA: 3'- -CGCUgCGCCUg---GCaGCaGCGGCAGCA- -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 74739 | 0.66 | 0.897711 |
Target: 5'- uCGuCGuCGGucucCCGacuggCGUCGCCGUCGa -3' miRNA: 3'- cGCuGC-GCCu---GGCa----GCAGCGGCAGCa -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 123588 | 0.66 | 0.897711 |
Target: 5'- gGCGGCGcCGGgaGCCGcCG-CGgCCGUCa- -3' miRNA: 3'- -CGCUGC-GCC--UGGCaGCaGC-GGCAGca -5' |
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14609 | 3' | -59.6 | NC_003521.1 | + | 125472 | 0.66 | 0.897711 |
Target: 5'- aGCGACGCGuGACC-UCcugUGCUGUCuGUg -3' miRNA: 3'- -CGCUGCGC-CUGGcAGca-GCGGCAG-CA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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