miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 5509 0.66 0.911556
Target:  5'- -aGAgGCGGuguagccgucgcauCUGUCGUCGCCaGUUGg -3'
miRNA:   3'- cgCUgCGCCu-------------GGCAGCAGCGG-CAGCa -5'
14609 3' -59.6 NC_003521.1 + 142753 0.66 0.909329
Target:  5'- gGCGACGaCGGGgugaccagcguCCG-CGgcggCGUCGUCGg -3'
miRNA:   3'- -CGCUGC-GCCU-----------GGCaGCa---GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 166575 0.66 0.909329
Target:  5'- aGCGACuccaGGAacCCGUCGUCcaCCGUCa- -3'
miRNA:   3'- -CGCUGcg--CCU--GGCAGCAGc-GGCAGca -5'
14609 3' -59.6 NC_003521.1 + 127068 0.66 0.909329
Target:  5'- -nGACGCGGcCUGUCGgucaGCCGcCa- -3'
miRNA:   3'- cgCUGCGCCuGGCAGCag--CGGCaGca -5'
14609 3' -59.6 NC_003521.1 + 47932 0.66 0.909329
Target:  5'- cGCGcUGCuGAUCGUCaacCGCCGUCGc -3'
miRNA:   3'- -CGCuGCGcCUGGCAGca-GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 18858 0.66 0.909329
Target:  5'- uGCGGCGUGGAgCUGUCGUgucaGCUGagcagCGa -3'
miRNA:   3'- -CGCUGCGCCU-GGCAGCAg---CGGCa----GCa -5'
14609 3' -59.6 NC_003521.1 + 223336 0.66 0.909329
Target:  5'- cGUGACcgGCGGcGCCGcuacCGgUGCCGUCGUc -3'
miRNA:   3'- -CGCUG--CGCC-UGGCa---GCaGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 167108 0.66 0.909329
Target:  5'- aGCGGuCGCGGcCCGg-GUCGCUG-CGc -3'
miRNA:   3'- -CGCU-GCGCCuGGCagCAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 100228 0.66 0.909329
Target:  5'- uCGAaGCGGAgCGUC-UCGCCGgccgCGa -3'
miRNA:   3'- cGCUgCGCCUgGCAGcAGCGGCa---GCa -5'
14609 3' -59.6 NC_003521.1 + 221848 0.66 0.909329
Target:  5'- cGCGGCGCGuccucGACCcccuccucGUUGUCGCUGggGUa -3'
miRNA:   3'- -CGCUGCGC-----CUGG--------CAGCAGCGGCagCA- -5'
14609 3' -59.6 NC_003521.1 + 197126 0.66 0.909329
Target:  5'- gGgGugGgGG-UCGUUGUCGUCGUCu- -3'
miRNA:   3'- -CgCugCgCCuGGCAGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 76944 0.66 0.908768
Target:  5'- aGCG-CGCGGugCGUuccagcaUGUCGCgGcCGa -3'
miRNA:   3'- -CGCuGCGCCugGCA-------GCAGCGgCaGCa -5'
14609 3' -59.6 NC_003521.1 + 235289 0.66 0.90362
Target:  5'- gGCGGcCGCGccGGCUGcCGUCaCCGUCGc -3'
miRNA:   3'- -CGCU-GCGC--CUGGCaGCAGcGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 191090 0.66 0.90362
Target:  5'- gGCGGCgGCGGGCUG-CGUC-UCGUCc- -3'
miRNA:   3'- -CGCUG-CGCCUGGCaGCAGcGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 117252 0.66 0.903039
Target:  5'- gGCGcCGCcGccaucccgccaccGCCGUCGUCGgCCGUgGUg -3'
miRNA:   3'- -CGCuGCGcC-------------UGGCAGCAGC-GGCAgCA- -5'
14609 3' -59.6 NC_003521.1 + 75883 0.66 0.898311
Target:  5'- gGCGACGCgagccgccggaggagGGGcCCGguuggucauccucaUCGUCGUCGUCa- -3'
miRNA:   3'- -CGCUGCG---------------CCU-GGC--------------AGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 139261 0.66 0.897711
Target:  5'- cGCGGaGCGGGgggaCGaCGaCGCCGUCGUc -3'
miRNA:   3'- -CGCUgCGCCUg---GCaGCaGCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 89614 0.66 0.897711
Target:  5'- gGCGcCGCGGucACCGUgGUggUGaCCGUCGc -3'
miRNA:   3'- -CGCuGCGCC--UGGCAgCA--GC-GGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 125472 0.66 0.897711
Target:  5'- aGCGACGCGuGACC-UCcugUGCUGUCuGUg -3'
miRNA:   3'- -CGCUGCGC-CUGGcAGca-GCGGCAG-CA- -5'
14609 3' -59.6 NC_003521.1 + 74739 0.66 0.897711
Target:  5'- uCGuCGuCGGucucCCGacuggCGUCGCCGUCGa -3'
miRNA:   3'- cGCuGC-GCCu---GGCa----GCAGCGGCAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.