miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 166960 0.65 0.886813
Target:  5'- gGGgGGAGGCUCucgucgcugugguuGACGUCGUUGCCcucgGCCg -3'
miRNA:   3'- -UCaCCUUCGGG--------------CUGCGGCAGUGG----CGG- -5'
14612 5' -59.7 NC_003521.1 + 167281 0.66 0.884872
Target:  5'- aGGUGGuuGAGCgUGAUGUucucguucuccacggCGUCGCCGaCCu -3'
miRNA:   3'- -UCACC--UUCGgGCUGCG---------------GCAGUGGC-GG- -5'
14612 5' -59.7 NC_003521.1 + 45424 0.66 0.882256
Target:  5'- cGGUGcccGCCguCGGCGCgGUCAUgGCCu -3'
miRNA:   3'- -UCACcuuCGG--GCUGCGgCAGUGgCGG- -5'
14612 5' -59.7 NC_003521.1 + 137538 0.66 0.882256
Target:  5'- cGUGGuGGCCuaCGACGagaCGgCGCCgGCCg -3'
miRNA:   3'- uCACCuUCGG--GCUGCg--GCaGUGG-CGG- -5'
14612 5' -59.7 NC_003521.1 + 17427 0.66 0.882256
Target:  5'- --cGGGgcgccacacGGCCCG-CGUCGgggCGCCGCg -3'
miRNA:   3'- ucaCCU---------UCGGGCuGCGGCa--GUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 37330 0.66 0.882256
Target:  5'- gGGUGGggGCggucgcggagGACGCaCGUauCCGCCg -3'
miRNA:   3'- -UCACCuuCGgg--------CUGCG-GCAguGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 72862 0.66 0.882256
Target:  5'- --cGGuAGGCacggCGGuCGUCGUCACCGCa -3'
miRNA:   3'- ucaCC-UUCGg---GCU-GCGGCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 19448 0.66 0.882256
Target:  5'- aAGgggGGAGGCgCGGCGggaccaUGUCGCUGCg -3'
miRNA:   3'- -UCa--CCUUCGgGCUGCg-----GCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 53178 0.66 0.882256
Target:  5'- --aGGAGGUCggCGACGCCGUCGgugaacCCuCCg -3'
miRNA:   3'- ucaCCUUCGG--GCUGCGGCAGU------GGcGG- -5'
14612 5' -59.7 NC_003521.1 + 109921 0.66 0.882256
Target:  5'- cGUGuu-GCCUGACGgggggucgauCUGUCGCCGCa -3'
miRNA:   3'- uCACcuuCGGGCUGC----------GGCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 144027 0.66 0.882256
Target:  5'- --cGcGAucguGCCCGuaGCGCCGcCGCUGCUg -3'
miRNA:   3'- ucaC-CUu---CGGGC--UGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 84196 0.66 0.882256
Target:  5'- --aGGAAGCCCagGGCGUCGcgcagCACCaggcgcgagagGCCg -3'
miRNA:   3'- ucaCCUUCGGG--CUGCGGCa----GUGG-----------CGG- -5'
14612 5' -59.7 NC_003521.1 + 118197 0.66 0.882256
Target:  5'- aAGUcGggGCcgCCGagcGCGCgGcCGCCGCCg -3'
miRNA:   3'- -UCAcCuuCG--GGC---UGCGgCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 221929 0.66 0.882256
Target:  5'- cGG-GGcuGCCgCGGCGCCucguccucGUCGCUGCUc -3'
miRNA:   3'- -UCaCCuuCGG-GCUGCGG--------CAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 121204 0.66 0.878274
Target:  5'- cAGUGGGuaaacguccaccugcAGCacgaGACGCUGcaccCGCCGCCc -3'
miRNA:   3'- -UCACCU---------------UCGgg--CUGCGGCa---GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 193332 0.66 0.87558
Target:  5'- gGGUGGucGCCUu-CGUucccaUGUCGCCGCUc -3'
miRNA:   3'- -UCACCuuCGGGcuGCG-----GCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 55934 0.66 0.87558
Target:  5'- aGGU-GAAGCCCaGGCGCaugagCACCGUg -3'
miRNA:   3'- -UCAcCUUCGGG-CUGCGgca--GUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 173696 0.66 0.87558
Target:  5'- uGUGc-GGCCCGcUGCUGUUGCUGCUg -3'
miRNA:   3'- uCACcuUCGGGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 53943 0.66 0.87558
Target:  5'- -cUGGAgacgcugagcuGGgCCGACgaGCCGUgcugcaCGCCGCCg -3'
miRNA:   3'- ucACCU-----------UCgGGCUG--CGGCA------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 240751 0.66 0.87558
Target:  5'- --cGGccGGCCCGcCGCaCGcCGCCGCg -3'
miRNA:   3'- ucaCCu-UCGGGCuGCG-GCaGUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.