Results 1 - 20 of 382 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14612 | 5' | -59.7 | NC_003521.1 | + | 166960 | 0.65 | 0.886813 |
Target: 5'- gGGgGGAGGCUCucgucgcugugguuGACGUCGUUGCCcucgGCCg -3' miRNA: 3'- -UCaCCUUCGGG--------------CUGCGGCAGUGG----CGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 167281 | 0.66 | 0.884872 |
Target: 5'- aGGUGGuuGAGCgUGAUGUucucguucuccacggCGUCGCCGaCCu -3' miRNA: 3'- -UCACC--UUCGgGCUGCG---------------GCAGUGGC-GG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 45424 | 0.66 | 0.882256 |
Target: 5'- cGGUGcccGCCguCGGCGCgGUCAUgGCCu -3' miRNA: 3'- -UCACcuuCGG--GCUGCGgCAGUGgCGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 137538 | 0.66 | 0.882256 |
Target: 5'- cGUGGuGGCCuaCGACGagaCGgCGCCgGCCg -3' miRNA: 3'- uCACCuUCGG--GCUGCg--GCaGUGG-CGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 17427 | 0.66 | 0.882256 |
Target: 5'- --cGGGgcgccacacGGCCCG-CGUCGgggCGCCGCg -3' miRNA: 3'- ucaCCU---------UCGGGCuGCGGCa--GUGGCGg -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 37330 | 0.66 | 0.882256 |
Target: 5'- gGGUGGggGCggucgcggagGACGCaCGUauCCGCCg -3' miRNA: 3'- -UCACCuuCGgg--------CUGCG-GCAguGGCGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 72862 | 0.66 | 0.882256 |
Target: 5'- --cGGuAGGCacggCGGuCGUCGUCACCGCa -3' miRNA: 3'- ucaCC-UUCGg---GCU-GCGGCAGUGGCGg -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 19448 | 0.66 | 0.882256 |
Target: 5'- aAGgggGGAGGCgCGGCGggaccaUGUCGCUGCg -3' miRNA: 3'- -UCa--CCUUCGgGCUGCg-----GCAGUGGCGg -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 53178 | 0.66 | 0.882256 |
Target: 5'- --aGGAGGUCggCGACGCCGUCGgugaacCCuCCg -3' miRNA: 3'- ucaCCUUCGG--GCUGCGGCAGU------GGcGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 109921 | 0.66 | 0.882256 |
Target: 5'- cGUGuu-GCCUGACGgggggucgauCUGUCGCCGCa -3' miRNA: 3'- uCACcuuCGGGCUGC----------GGCAGUGGCGg -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 144027 | 0.66 | 0.882256 |
Target: 5'- --cGcGAucguGCCCGuaGCGCCGcCGCUGCUg -3' miRNA: 3'- ucaC-CUu---CGGGC--UGCGGCaGUGGCGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 84196 | 0.66 | 0.882256 |
Target: 5'- --aGGAAGCCCagGGCGUCGcgcagCACCaggcgcgagagGCCg -3' miRNA: 3'- ucaCCUUCGGG--CUGCGGCa----GUGG-----------CGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 118197 | 0.66 | 0.882256 |
Target: 5'- aAGUcGggGCcgCCGagcGCGCgGcCGCCGCCg -3' miRNA: 3'- -UCAcCuuCG--GGC---UGCGgCaGUGGCGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 221929 | 0.66 | 0.882256 |
Target: 5'- cGG-GGcuGCCgCGGCGCCucguccucGUCGCUGCUc -3' miRNA: 3'- -UCaCCuuCGG-GCUGCGG--------CAGUGGCGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 121204 | 0.66 | 0.878274 |
Target: 5'- cAGUGGGuaaacguccaccugcAGCacgaGACGCUGcaccCGCCGCCc -3' miRNA: 3'- -UCACCU---------------UCGgg--CUGCGGCa---GUGGCGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 193332 | 0.66 | 0.87558 |
Target: 5'- gGGUGGucGCCUu-CGUucccaUGUCGCCGCUc -3' miRNA: 3'- -UCACCuuCGGGcuGCG-----GCAGUGGCGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 55934 | 0.66 | 0.87558 |
Target: 5'- aGGU-GAAGCCCaGGCGCaugagCACCGUg -3' miRNA: 3'- -UCAcCUUCGGG-CUGCGgca--GUGGCGg -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 173696 | 0.66 | 0.87558 |
Target: 5'- uGUGc-GGCCCGcUGCUGUUGCUGCUg -3' miRNA: 3'- uCACcuUCGGGCuGCGGCAGUGGCGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 53943 | 0.66 | 0.87558 |
Target: 5'- -cUGGAgacgcugagcuGGgCCGACgaGCCGUgcugcaCGCCGCCg -3' miRNA: 3'- ucACCU-----------UCgGGCUG--CGGCA------GUGGCGG- -5' |
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14612 | 5' | -59.7 | NC_003521.1 | + | 240751 | 0.66 | 0.87558 |
Target: 5'- --cGGccGGCCCGcCGCaCGcCGCCGCg -3' miRNA: 3'- ucaCCu-UCGGGCuGCG-GCaGUGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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