Results 1 - 20 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14613 | 3' | -55.7 | NC_003521.1 | + | 218085 | 0.66 | 0.969212 |
Target: 5'- aGCGaGGCGGcgGCGCCGGuGacgaugaGGGCg -3' miRNA: 3'- aCGCaUCGUCuuUGUGGCU-Cg------CCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 160775 | 0.66 | 0.969212 |
Target: 5'- cGCGUgccgccGGCGGc-ACGCgGGcGCGGGUCu -3' miRNA: 3'- aCGCA------UCGUCuuUGUGgCU-CGCCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 137463 | 0.66 | 0.969212 |
Target: 5'- cGCGcaccgacgAGUGGAAggGCGCCGGcgugucGCGGcGCCg -3' miRNA: 3'- aCGCa-------UCGUCUU--UGUGGCU------CGCC-CGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 172071 | 0.66 | 0.969212 |
Target: 5'- cUGCGUcaggaccgucAGCGGcgGCGugaugaaguCCGuGCGGGCg -3' miRNA: 3'- -ACGCA----------UCGUCuuUGU---------GGCuCGCCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 130974 | 0.66 | 0.969212 |
Target: 5'- cGCGgugggGGCAGuGAGCACgguacccagccUGAcGCGGGCg -3' miRNA: 3'- aCGCa----UCGUC-UUUGUG-----------GCU-CGCCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 148383 | 0.66 | 0.969212 |
Target: 5'- aGCGggguGCGGGGAgGCUGGG-GGGUg -3' miRNA: 3'- aCGCau--CGUCUUUgUGGCUCgCCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 133604 | 0.66 | 0.969212 |
Target: 5'- aGCcuccuGCuGGAGCACUGuGUGGGCa -3' miRNA: 3'- aCGcau--CGuCUUUGUGGCuCGCCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 87739 | 0.66 | 0.969212 |
Target: 5'- gGCGUGGUGG--GCcCCGGccCGGGCCc -3' miRNA: 3'- aCGCAUCGUCuuUGuGGCUc-GCCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 125942 | 0.66 | 0.969212 |
Target: 5'- -uUGUAGUAGuuGAUgucgGCCGAcGCGGGCg -3' miRNA: 3'- acGCAUCGUCu-UUG----UGGCU-CGCCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 226879 | 0.66 | 0.969212 |
Target: 5'- aGCGagggcagcuGCGGggGCACCacggcggccAGCGcGGCCu -3' miRNA: 3'- aCGCau-------CGUCuuUGUGGc--------UCGC-CCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 129280 | 0.66 | 0.969212 |
Target: 5'- -uCGaGGUAGAGGCGCCG-GCGGuaCu -3' miRNA: 3'- acGCaUCGUCUUUGUGGCuCGCCcgG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 172251 | 0.66 | 0.969212 |
Target: 5'- uUGCGguaguccgaggAGCGGggGCACagcuGGUGGGUg -3' miRNA: 3'- -ACGCa----------UCGUCuuUGUGgc--UCGCCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 198789 | 0.66 | 0.969212 |
Target: 5'- gUGgGUAGCAGcuGCgugguGCCG-GCGGcGUCu -3' miRNA: 3'- -ACgCAUCGUCuuUG-----UGGCuCGCC-CGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 177978 | 0.66 | 0.969212 |
Target: 5'- cGUGUAccaccuGCcGGGuCAgaGAGCGGGCCa -3' miRNA: 3'- aCGCAU------CGuCUUuGUggCUCGCCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 120732 | 0.66 | 0.969212 |
Target: 5'- -cCGUGGCcaccAGggGCACCaGGUGGccGCCu -3' miRNA: 3'- acGCAUCG----UCuuUGUGGcUCGCC--CGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 110874 | 0.66 | 0.969212 |
Target: 5'- aGCGgcccgcGGCAGAAcuGCGCCGucucGGCCa -3' miRNA: 3'- aCGCa-----UCGUCUU--UGUGGCucgcCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 218696 | 0.66 | 0.969212 |
Target: 5'- gGCGgcgaaGGCGGAggaGACGgCGgcggcGGCGGGCg -3' miRNA: 3'- aCGCa----UCGUCU---UUGUgGC-----UCGCCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 161338 | 0.66 | 0.969212 |
Target: 5'- gGCGU-GCAGAAGCAguucaugcagaUCGugccGCGGGgCg -3' miRNA: 3'- aCGCAuCGUCUUUGU-----------GGCu---CGCCCgG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 98546 | 0.66 | 0.969212 |
Target: 5'- aGCGgcGGCGGGucccagcccgAGC-CCGAGUcGGCCg -3' miRNA: 3'- aCGCa-UCGUCU----------UUGuGGCUCGcCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 87206 | 0.66 | 0.968921 |
Target: 5'- cGCuGgcGCAGGAGCuGCUGAGCGccaaccuGGCg -3' miRNA: 3'- aCG-CauCGUCUUUG-UGGCUCGC-------CCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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