miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 226879 0.66 0.969212
Target:  5'- aGCGagggcagcuGCGGggGCACCacggcggccAGCGcGGCCu -3'
miRNA:   3'- aCGCau-------CGUCuuUGUGGc--------UCGC-CCGG- -5'
14613 3' -55.7 NC_003521.1 + 87739 0.66 0.969212
Target:  5'- gGCGUGGUGG--GCcCCGGccCGGGCCc -3'
miRNA:   3'- aCGCAUCGUCuuUGuGGCUc-GCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 125942 0.66 0.969212
Target:  5'- -uUGUAGUAGuuGAUgucgGCCGAcGCGGGCg -3'
miRNA:   3'- acGCAUCGUCu-UUG----UGGCU-CGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 98546 0.66 0.969212
Target:  5'- aGCGgcGGCGGGucccagcccgAGC-CCGAGUcGGCCg -3'
miRNA:   3'- aCGCa-UCGUCU----------UUGuGGCUCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 133604 0.66 0.969212
Target:  5'- aGCcuccuGCuGGAGCACUGuGUGGGCa -3'
miRNA:   3'- aCGcau--CGuCUUUGUGGCuCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 130974 0.66 0.969212
Target:  5'- cGCGgugggGGCAGuGAGCACgguacccagccUGAcGCGGGCg -3'
miRNA:   3'- aCGCa----UCGUC-UUUGUG-----------GCU-CGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 148383 0.66 0.969212
Target:  5'- aGCGggguGCGGGGAgGCUGGG-GGGUg -3'
miRNA:   3'- aCGCau--CGUCUUUgUGGCUCgCCCGg -5'
14613 3' -55.7 NC_003521.1 + 172071 0.66 0.969212
Target:  5'- cUGCGUcaggaccgucAGCGGcgGCGugaugaaguCCGuGCGGGCg -3'
miRNA:   3'- -ACGCA----------UCGUCuuUGU---------GGCuCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 137463 0.66 0.969212
Target:  5'- cGCGcaccgacgAGUGGAAggGCGCCGGcgugucGCGGcGCCg -3'
miRNA:   3'- aCGCa-------UCGUCUU--UGUGGCU------CGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 177978 0.66 0.969212
Target:  5'- cGUGUAccaccuGCcGGGuCAgaGAGCGGGCCa -3'
miRNA:   3'- aCGCAU------CGuCUUuGUggCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 218085 0.66 0.969212
Target:  5'- aGCGaGGCGGcgGCGCCGGuGacgaugaGGGCg -3'
miRNA:   3'- aCGCaUCGUCuuUGUGGCU-Cg------CCCGg -5'
14613 3' -55.7 NC_003521.1 + 129280 0.66 0.969212
Target:  5'- -uCGaGGUAGAGGCGCCG-GCGGuaCu -3'
miRNA:   3'- acGCaUCGUCUUUGUGGCuCGCCcgG- -5'
14613 3' -55.7 NC_003521.1 + 161338 0.66 0.969212
Target:  5'- gGCGU-GCAGAAGCAguucaugcagaUCGugccGCGGGgCg -3'
miRNA:   3'- aCGCAuCGUCUUUGU-----------GGCu---CGCCCgG- -5'
14613 3' -55.7 NC_003521.1 + 218696 0.66 0.969212
Target:  5'- gGCGgcgaaGGCGGAggaGACGgCGgcggcGGCGGGCg -3'
miRNA:   3'- aCGCa----UCGUCU---UUGUgGC-----UCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 110874 0.66 0.969212
Target:  5'- aGCGgcccgcGGCAGAAcuGCGCCGucucGGCCa -3'
miRNA:   3'- aCGCa-----UCGUCUU--UGUGGCucgcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 120732 0.66 0.969212
Target:  5'- -cCGUGGCcaccAGggGCACCaGGUGGccGCCu -3'
miRNA:   3'- acGCAUCG----UCuuUGUGGcUCGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 160775 0.66 0.969212
Target:  5'- cGCGUgccgccGGCGGc-ACGCgGGcGCGGGUCu -3'
miRNA:   3'- aCGCA------UCGUCuuUGUGgCU-CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 198789 0.66 0.969212
Target:  5'- gUGgGUAGCAGcuGCgugguGCCG-GCGGcGUCu -3'
miRNA:   3'- -ACgCAUCGUCuuUG-----UGGCuCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 172251 0.66 0.969212
Target:  5'- uUGCGguaguccgaggAGCGGggGCACagcuGGUGGGUg -3'
miRNA:   3'- -ACGCa----------UCGUCuuUGUGgc--UCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 87206 0.66 0.968921
Target:  5'- cGCuGgcGCAGGAGCuGCUGAGCGccaaccuGGCg -3'
miRNA:   3'- aCG-CauCGUCUUUG-UGGCUCGC-------CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.