miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 73009 0.66 0.965802
Target:  5'- uGCUcUGGCugaCAUGCGc-GGUGGUGCUGGc -3'
miRNA:   3'- -UGA-ACCG---GUGCGCuuUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 116257 0.66 0.965802
Target:  5'- aACcUGGCCucggaccugauCGUGAcguacgugcgcAAGCuGGCGCUGGa -3'
miRNA:   3'- -UGaACCGGu----------GCGCU-----------UUCG-UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 129240 0.66 0.965802
Target:  5'- cGC-UGGCCACGCGc-GGCA-C-CUGGa -3'
miRNA:   3'- -UGaACCGGUGCGCuuUCGUcGcGACC- -5'
14614 3' -55.7 NC_003521.1 + 107661 0.66 0.965802
Target:  5'- uACUUGGggACGCGGAacauauuacGGCucauGGCGUUGGc -3'
miRNA:   3'- -UGAACCggUGCGCUU---------UCG----UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 180923 0.66 0.965802
Target:  5'- uACUgcGGCCGCuCGAuGGUGGCGC-GGu -3'
miRNA:   3'- -UGAa-CCGGUGcGCUuUCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 63877 0.66 0.965802
Target:  5'- gACgaGGCgGCGCGccgggagcuGCAGCaGUUGGg -3'
miRNA:   3'- -UGaaCCGgUGCGCuuu------CGUCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 27235 0.66 0.965802
Target:  5'- uGC-UGGUCGgGCGAGAGCAcGgGCUc- -3'
miRNA:   3'- -UGaACCGGUgCGCUUUCGU-CgCGAcc -5'
14614 3' -55.7 NC_003521.1 + 204891 0.66 0.965802
Target:  5'- -aUUGGCCGCGCGgcGGgA-CGgUGGc -3'
miRNA:   3'- ugAACCGGUGCGCuuUCgUcGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 84232 0.66 0.965802
Target:  5'- ---aGGCCGCGCugcaccaccucGGGguggaugcgauGGCGGuCGCUGGg -3'
miRNA:   3'- ugaaCCGGUGCG-----------CUU-----------UCGUC-GCGACC- -5'
14614 3' -55.7 NC_003521.1 + 35995 0.66 0.962557
Target:  5'- gGCUUGGUCA-GCGAcGGCGaCGgaGGu -3'
miRNA:   3'- -UGAACCGGUgCGCUuUCGUcGCgaCC- -5'
14614 3' -55.7 NC_003521.1 + 15049 0.66 0.962557
Target:  5'- gACga-GCgGCGCGAgcgcGAGCGGCGCg-- -3'
miRNA:   3'- -UGaacCGgUGCGCU----UUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 159749 0.66 0.962557
Target:  5'- ----cGCCGCGCGcuucauGGGCGacGUGCUGGg -3'
miRNA:   3'- ugaacCGGUGCGCu-----UUCGU--CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 50489 0.66 0.962557
Target:  5'- cGCgu-GCCACaGCGugucGGCGGCGgUGGa -3'
miRNA:   3'- -UGaacCGGUG-CGCuu--UCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 160055 0.66 0.962557
Target:  5'- cACUaucGCCACGguCGAcAGCAugaucGCGCUGGa -3'
miRNA:   3'- -UGAac-CGGUGC--GCUuUCGU-----CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 36781 0.66 0.962557
Target:  5'- gACUggcagGGCCACGCGcu-GCGGagcCGCUcgcGGa -3'
miRNA:   3'- -UGAa----CCGGUGCGCuuuCGUC---GCGA---CC- -5'
14614 3' -55.7 NC_003521.1 + 103124 0.66 0.962557
Target:  5'- aGC-UGGCgcaGCGCGc-GGCGGUGCUGc -3'
miRNA:   3'- -UGaACCGg--UGCGCuuUCGUCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 59357 0.66 0.962557
Target:  5'- cGCUgcaGGCgGCGCGc---CAGCcGCUGGa -3'
miRNA:   3'- -UGAa--CCGgUGCGCuuucGUCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 152728 0.66 0.962557
Target:  5'- aGCUguUGGCCACcagcCGGuuguccuccacGGGCAGCGCgcGGa -3'
miRNA:   3'- -UGA--ACCGGUGc---GCU-----------UUCGUCGCGa-CC- -5'
14614 3' -55.7 NC_003521.1 + 196763 0.66 0.962557
Target:  5'- uGCUgccccGGCCgGCGCGAccGCgGGCGC-GGu -3'
miRNA:   3'- -UGAa----CCGG-UGCGCUuuCG-UCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 76970 0.66 0.962557
Target:  5'- ---cGGCCgaugcGCGUGAugcuGGCGGCGaUGGg -3'
miRNA:   3'- ugaaCCGG-----UGCGCUu---UCGUCGCgACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.