Results 1 - 20 of 196 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 73009 | 0.66 | 0.965802 |
Target: 5'- uGCUcUGGCugaCAUGCGc-GGUGGUGCUGGc -3' miRNA: 3'- -UGA-ACCG---GUGCGCuuUCGUCGCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 116257 | 0.66 | 0.965802 |
Target: 5'- aACcUGGCCucggaccugauCGUGAcguacgugcgcAAGCuGGCGCUGGa -3' miRNA: 3'- -UGaACCGGu----------GCGCU-----------UUCG-UCGCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 129240 | 0.66 | 0.965802 |
Target: 5'- cGC-UGGCCACGCGc-GGCA-C-CUGGa -3' miRNA: 3'- -UGaACCGGUGCGCuuUCGUcGcGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 107661 | 0.66 | 0.965802 |
Target: 5'- uACUUGGggACGCGGAacauauuacGGCucauGGCGUUGGc -3' miRNA: 3'- -UGAACCggUGCGCUU---------UCG----UCGCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 180923 | 0.66 | 0.965802 |
Target: 5'- uACUgcGGCCGCuCGAuGGUGGCGC-GGu -3' miRNA: 3'- -UGAa-CCGGUGcGCUuUCGUCGCGaCC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 63877 | 0.66 | 0.965802 |
Target: 5'- gACgaGGCgGCGCGccgggagcuGCAGCaGUUGGg -3' miRNA: 3'- -UGaaCCGgUGCGCuuu------CGUCG-CGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 27235 | 0.66 | 0.965802 |
Target: 5'- uGC-UGGUCGgGCGAGAGCAcGgGCUc- -3' miRNA: 3'- -UGaACCGGUgCGCUUUCGU-CgCGAcc -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 204891 | 0.66 | 0.965802 |
Target: 5'- -aUUGGCCGCGCGgcGGgA-CGgUGGc -3' miRNA: 3'- ugAACCGGUGCGCuuUCgUcGCgACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 84232 | 0.66 | 0.965802 |
Target: 5'- ---aGGCCGCGCugcaccaccucGGGguggaugcgauGGCGGuCGCUGGg -3' miRNA: 3'- ugaaCCGGUGCG-----------CUU-----------UCGUC-GCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 35995 | 0.66 | 0.962557 |
Target: 5'- gGCUUGGUCA-GCGAcGGCGaCGgaGGu -3' miRNA: 3'- -UGAACCGGUgCGCUuUCGUcGCgaCC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 15049 | 0.66 | 0.962557 |
Target: 5'- gACga-GCgGCGCGAgcgcGAGCGGCGCg-- -3' miRNA: 3'- -UGaacCGgUGCGCU----UUCGUCGCGacc -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 159749 | 0.66 | 0.962557 |
Target: 5'- ----cGCCGCGCGcuucauGGGCGacGUGCUGGg -3' miRNA: 3'- ugaacCGGUGCGCu-----UUCGU--CGCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 50489 | 0.66 | 0.962557 |
Target: 5'- cGCgu-GCCACaGCGugucGGCGGCGgUGGa -3' miRNA: 3'- -UGaacCGGUG-CGCuu--UCGUCGCgACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 160055 | 0.66 | 0.962557 |
Target: 5'- cACUaucGCCACGguCGAcAGCAugaucGCGCUGGa -3' miRNA: 3'- -UGAac-CGGUGC--GCUuUCGU-----CGCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 36781 | 0.66 | 0.962557 |
Target: 5'- gACUggcagGGCCACGCGcu-GCGGagcCGCUcgcGGa -3' miRNA: 3'- -UGAa----CCGGUGCGCuuuCGUC---GCGA---CC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 103124 | 0.66 | 0.962557 |
Target: 5'- aGC-UGGCgcaGCGCGc-GGCGGUGCUGc -3' miRNA: 3'- -UGaACCGg--UGCGCuuUCGUCGCGACc -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 59357 | 0.66 | 0.962557 |
Target: 5'- cGCUgcaGGCgGCGCGc---CAGCcGCUGGa -3' miRNA: 3'- -UGAa--CCGgUGCGCuuucGUCG-CGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 152728 | 0.66 | 0.962557 |
Target: 5'- aGCUguUGGCCACcagcCGGuuguccuccacGGGCAGCGCgcGGa -3' miRNA: 3'- -UGA--ACCGGUGc---GCU-----------UUCGUCGCGa-CC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 196763 | 0.66 | 0.962557 |
Target: 5'- uGCUgccccGGCCgGCGCGAccGCgGGCGC-GGu -3' miRNA: 3'- -UGAa----CCGG-UGCGCUuuCG-UCGCGaCC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 76970 | 0.66 | 0.962557 |
Target: 5'- ---cGGCCgaugcGCGUGAugcuGGCGGCGaUGGg -3' miRNA: 3'- ugaaCCGG-----UGCGCUu---UCGUCGCgACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home