miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 43377 0.66 0.692411
Target:  5'- gAGCAUGCGcuGGCGCCgCCUG-GCCa- -3'
miRNA:   3'- -UCGUGCGUc-CCGUGGaGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 138821 0.66 0.692411
Target:  5'- uGGCGCGCcugauGGcGGCGgCUacggCCUGCGgCCAg -3'
miRNA:   3'- -UCGUGCG-----UC-CCGUgGA----GGACGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 95275 0.66 0.692411
Target:  5'- uGCACGaAGGGguCCUCCuucuUGCGCa-- -3'
miRNA:   3'- uCGUGCgUCCCguGGAGG----ACGCGggu -5'
14617 5' -63.3 NC_003521.1 + 73218 0.66 0.692411
Target:  5'- gAGCGC-CuGcGGCGCCU-CUGCGCgCCGc -3'
miRNA:   3'- -UCGUGcGuC-CCGUGGAgGACGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 190351 0.66 0.691465
Target:  5'- uGGCACGCGccGGGCAgcaucuccgucuCCUCCgacGUcgauacaGCCCAc -3'
miRNA:   3'- -UCGUGCGU--CCCGU------------GGAGGa--CG-------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 69292 0.66 0.68957
Target:  5'- cAGCGCGCAGccccgacacagggcGGCGCCgUCCU-CGCuuuCCAa -3'
miRNA:   3'- -UCGUGCGUC--------------CCGUGG-AGGAcGCG---GGU- -5'
14617 5' -63.3 NC_003521.1 + 141080 0.66 0.686724
Target:  5'- uGCgACGUGGaGGC-CCUCCUGUggcugcucuacugcgGCCCGc -3'
miRNA:   3'- uCG-UGCGUC-CCGuGGAGGACG---------------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 95549 0.66 0.682925
Target:  5'- cGGCGCGCGagcuGGcCGCCgaggCCgaggagGCGCCCu -3'
miRNA:   3'- -UCGUGCGUc---CC-GUGGa---GGa-----CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 87419 0.66 0.682925
Target:  5'- cGC-CGguGGcGCACCugcacgaggagaUCCUGCGCUa- -3'
miRNA:   3'- uCGuGCguCC-CGUGG------------AGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 138837 0.66 0.682925
Target:  5'- uGGaCACGCAGcuGCACCgCCUGCuggacCCCAu -3'
miRNA:   3'- -UC-GUGCGUCc-CGUGGaGGACGc----GGGU- -5'
14617 5' -63.3 NC_003521.1 + 100998 0.66 0.681974
Target:  5'- cGCuCGCugagggaggacaGGGGCGCgUCCUGgcgggcaCGCCCGu -3'
miRNA:   3'- uCGuGCG------------UCCCGUGgAGGAC-------GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 154463 0.66 0.673402
Target:  5'- cGCACGCuGuuggucaccGGCACCgCCgGCGCCg- -3'
miRNA:   3'- uCGUGCGuC---------CCGUGGaGGaCGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 102332 0.66 0.669584
Target:  5'- cGUGCGCGuGGGCGCCgacgCCgggguggcggcagGCGCUCu -3'
miRNA:   3'- uCGUGCGU-CCCGUGGa---GGa------------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 91182 0.66 0.663849
Target:  5'- cGCAC-CAGGagaGCACCUcgCCggcgGCGUCCAg -3'
miRNA:   3'- uCGUGcGUCC---CGUGGA--GGa---CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 28753 0.66 0.663849
Target:  5'- cGCGCGCGGGccGCGCCaccgcCCUaGCGCUg- -3'
miRNA:   3'- uCGUGCGUCC--CGUGGa----GGA-CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 164654 0.66 0.654274
Target:  5'- -uCACGCAGGcccgcgaCACCUguaCCUGCGCCg- -3'
miRNA:   3'- ucGUGCGUCCc------GUGGA---GGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 121946 0.66 0.654274
Target:  5'- cGuCACGUucuGCACCUCCU-CGCCCGu -3'
miRNA:   3'- uC-GUGCGuccCGUGGAGGAcGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 112364 0.66 0.654274
Target:  5'- cGCACGCGGcGGCugCggcgUCU-CGUCCAc -3'
miRNA:   3'- uCGUGCGUC-CCGugGa---GGAcGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 228063 0.66 0.654274
Target:  5'- cGCACGCGcGGGUcccagcucACgUCCgagGCGCCgGa -3'
miRNA:   3'- uCGUGCGU-CCCG--------UGgAGGa--CGCGGgU- -5'
14617 5' -63.3 NC_003521.1 + 218626 0.66 0.654274
Target:  5'- cAGCGCGCGGcGGUaagcgGCCacggCCggcgGCGCCUc -3'
miRNA:   3'- -UCGUGCGUC-CCG-----UGGa---GGa---CGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.