miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 104891 0.66 0.745825
Target:  5'- aGGCGuCGCa--CAUCccgCGGCCguggCCGAGg -3'
miRNA:   3'- -CCGC-GCGgagGUGGa--GCCGGa---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 183595 0.66 0.745825
Target:  5'- cGCGagaGCCgCuCGCCUCugagcuacGCCUCCGAGu -3'
miRNA:   3'- cCGCg--CGGaG-GUGGAGc-------CGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 99955 0.66 0.745825
Target:  5'- gGGgGCGgCggCGCCUCGGCCgagaCCGcGa -3'
miRNA:   3'- -CCgCGCgGagGUGGAGCCGGa---GGCuC- -5'
14620 5' -63.3 NC_003521.1 + 196744 0.66 0.745825
Target:  5'- cGGCgGCGCCUgCACCgucugCuGCC-CCGGc -3'
miRNA:   3'- -CCG-CGCGGAgGUGGa----GcCGGaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 54712 0.66 0.745825
Target:  5'- gGGCGCGCacauggagAUCUUGGCCgagaggUCCGAGa -3'
miRNA:   3'- -CCGCGCGgagg----UGGAGCCGG------AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 195001 0.66 0.745825
Target:  5'- -aCGCGCUUUCGCCgugccagUGGCCUUCGc- -3'
miRNA:   3'- ccGCGCGGAGGUGGa------GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 88745 0.66 0.745825
Target:  5'- cGGCGCaCg-UCGCCgUGGuCCUCCGAGa -3'
miRNA:   3'- -CCGCGcGgaGGUGGaGCC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 149545 0.66 0.745825
Target:  5'- cGGCGCGCgCUCCuucuucuuCCcCGGUUUCCc-- -3'
miRNA:   3'- -CCGCGCG-GAGGu-------GGaGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 103662 0.66 0.745825
Target:  5'- cGGCG-GCCgcugCgGCCgCGGCCauggcgggcgagUCCGAGc -3'
miRNA:   3'- -CCGCgCGGa---GgUGGaGCCGG------------AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 112648 0.66 0.745825
Target:  5'- aGCGCGUCUaCCACCU-GGCCcagaUgGAGa -3'
miRNA:   3'- cCGCGCGGA-GGUGGAgCCGGa---GgCUC- -5'
14620 5' -63.3 NC_003521.1 + 151310 0.66 0.745825
Target:  5'- cGCGCGCaaggCgGCCaggcgggUGGCgUCCGAGg -3'
miRNA:   3'- cCGCGCGga--GgUGGa------GCCGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 184195 0.66 0.745825
Target:  5'- uGGUGCGCUUCUucg-UGGaCCUCUGGGa -3'
miRNA:   3'- -CCGCGCGGAGGuggaGCC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 55658 0.66 0.745825
Target:  5'- aGGUGCGCCaCCucguCgUCGGgCCccaCCGAGa -3'
miRNA:   3'- -CCGCGCGGaGGu---GgAGCC-GGa--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 129110 0.66 0.744044
Target:  5'- uGGCGUGCCggCGCacggacuggacgUCGGCgUCCGAc -3'
miRNA:   3'- -CCGCGCGGagGUGg-----------AGCCGgAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 76393 0.66 0.736886
Target:  5'- cGGCGC-CCUCCACCUUGccgauguagcGCUUCUu-- -3'
miRNA:   3'- -CCGCGcGGAGGUGGAGC----------CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 37129 0.66 0.736886
Target:  5'- cGGCGCGCaacaugCCGCg-CGGCUUCUGc- -3'
miRNA:   3'- -CCGCGCGga----GGUGgaGCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 212729 0.66 0.736886
Target:  5'- gGGCGaGCg-CCugCUCGGCUUCCc-- -3'
miRNA:   3'- -CCGCgCGgaGGugGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 119535 0.66 0.736886
Target:  5'- gGGuUGUGCCgcagcaCCACCUCGGCg-CCGuGc -3'
miRNA:   3'- -CC-GCGCGGa-----GGUGGAGCCGgaGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 72318 0.66 0.736886
Target:  5'- uGGCGuCGCCgu--CCUCcGCCUCCGu- -3'
miRNA:   3'- -CCGC-GCGGagguGGAGcCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 94961 0.66 0.736886
Target:  5'- cGGCGcCGCCcgCCGCCg-GGCC-CaGAGa -3'
miRNA:   3'- -CCGC-GCGGa-GGUGGagCCGGaGgCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.