Results 1 - 20 of 773 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14621 | 3' | -60.1 | NC_003521.1 | + | 164041 | 0.66 | 0.846929 |
Target: 5'- -gGGGAAUUGGUGGUggccucggccacGGCGaCGGUCGCc -3' miRNA: 3'- cgUCCUUGGUCGCCG------------UCGC-GUCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 174484 | 0.66 | 0.846929 |
Target: 5'- aGCGGGAuCCAGuuGCuGCcagGCGGCCu- -3' miRNA: 3'- -CGUCCUuGGUCgcCGuCG---CGUCGGcg -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 212225 | 0.66 | 0.846929 |
Target: 5'- aCAGGAu--GGUGGCGguGCGCAGCaGCc -3' miRNA: 3'- cGUCCUuggUCGCCGU--CGCGUCGgCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 92243 | 0.66 | 0.846929 |
Target: 5'- aCGGGcGCCGcGCGGUcuuuuGGC-CGGUCGCg -3' miRNA: 3'- cGUCCuUGGU-CGCCG-----UCGcGUCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 117791 | 0.66 | 0.846929 |
Target: 5'- gGCGGcGGACaccguCAGaaGCAGCGUAGCgGUa -3' miRNA: 3'- -CGUC-CUUG-----GUCgcCGUCGCGUCGgCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 6066 | 0.66 | 0.846929 |
Target: 5'- cGCAGGGcgugaucacGCCAGCcguugcagaGGCAccaacggucGUGCgAGUCGCg -3' miRNA: 3'- -CGUCCU---------UGGUCG---------CCGU---------CGCG-UCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 48726 | 0.66 | 0.846929 |
Target: 5'- aGguGGAgacGCCGGCGacgcuGCAGCacaAGCCGa -3' miRNA: 3'- -CguCCU---UGGUCGC-----CGUCGcg-UCGGCg -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 77099 | 0.66 | 0.846929 |
Target: 5'- cGCAuGGggUC-GCGGCAcucGCGCAuGCacuCGCg -3' miRNA: 3'- -CGU-CCuuGGuCGCCGU---CGCGU-CG---GCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 8146 | 0.66 | 0.846929 |
Target: 5'- gGUAGGucugCAGCGGUacAGUGCAGUuacggCGCg -3' miRNA: 3'- -CGUCCuug-GUCGCCG--UCGCGUCG-----GCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 142205 | 0.66 | 0.846929 |
Target: 5'- aGgAGGAGCgAcGUGGCGGCagaAGCCGa -3' miRNA: 3'- -CgUCCUUGgU-CGCCGUCGcg-UCGGCg -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 38995 | 0.66 | 0.846929 |
Target: 5'- aCAGGcGCUGGUGGauguGGCGCugcacGGCCGUc -3' miRNA: 3'- cGUCCuUGGUCGCCg---UCGCG-----UCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 224086 | 0.66 | 0.846929 |
Target: 5'- gGCGGGcgcgcgcGCCGGCGGUcGC-CGaacucGCCGCg -3' miRNA: 3'- -CGUCCu------UGGUCGCCGuCGcGU-----CGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 74362 | 0.66 | 0.846929 |
Target: 5'- cGCGGcuacGGCCAGU-GCGGCGaCGGCuCGCc -3' miRNA: 3'- -CGUCc---UUGGUCGcCGUCGC-GUCG-GCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 128858 | 0.66 | 0.846929 |
Target: 5'- aGCAGGAACagcGUGGCca-GCAGCUucuGCu -3' miRNA: 3'- -CGUCCUUGgu-CGCCGucgCGUCGG---CG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 239223 | 0.66 | 0.846929 |
Target: 5'- aCAGGcGCUGGUGGauguGGCGCugcacGGCCGUc -3' miRNA: 3'- cGUCCuUGGUCGCCg---UCGCG-----UCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 127828 | 0.66 | 0.846929 |
Target: 5'- -aAGGuGCCcgGGUGGUaguGGCGCccGCCGCu -3' miRNA: 3'- cgUCCuUGG--UCGCCG---UCGCGu-CGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 18253 | 0.66 | 0.846929 |
Target: 5'- --cGGGACgAGCGGUGGUGgGGaccugcCCGCg -3' miRNA: 3'- cguCCUUGgUCGCCGUCGCgUC------GGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 192027 | 0.66 | 0.846929 |
Target: 5'- uCAGGuucugcACCGccggcgugcGCGGCAGaCGCGGCgucCGCg -3' miRNA: 3'- cGUCCu-----UGGU---------CGCCGUC-GCGUCG---GCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 77969 | 0.66 | 0.846929 |
Target: 5'- --uGGAGCCGGCcGCGG-GCucGCCGUu -3' miRNA: 3'- cguCCUUGGUCGcCGUCgCGu-CGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 102808 | 0.66 | 0.846929 |
Target: 5'- cCAGcu-CgGGCGGCAGCaaGUAGCgGCg -3' miRNA: 3'- cGUCcuuGgUCGCCGUCG--CGUCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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