miRNA display CGI


Results 1 - 20 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 164041 0.66 0.846929
Target:  5'- -gGGGAAUUGGUGGUggccucggccacGGCGaCGGUCGCc -3'
miRNA:   3'- cgUCCUUGGUCGCCG------------UCGC-GUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 174484 0.66 0.846929
Target:  5'- aGCGGGAuCCAGuuGCuGCcagGCGGCCu- -3'
miRNA:   3'- -CGUCCUuGGUCgcCGuCG---CGUCGGcg -5'
14621 3' -60.1 NC_003521.1 + 212225 0.66 0.846929
Target:  5'- aCAGGAu--GGUGGCGguGCGCAGCaGCc -3'
miRNA:   3'- cGUCCUuggUCGCCGU--CGCGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 92243 0.66 0.846929
Target:  5'- aCGGGcGCCGcGCGGUcuuuuGGC-CGGUCGCg -3'
miRNA:   3'- cGUCCuUGGU-CGCCG-----UCGcGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 117791 0.66 0.846929
Target:  5'- gGCGGcGGACaccguCAGaaGCAGCGUAGCgGUa -3'
miRNA:   3'- -CGUC-CUUG-----GUCgcCGUCGCGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 6066 0.66 0.846929
Target:  5'- cGCAGGGcgugaucacGCCAGCcguugcagaGGCAccaacggucGUGCgAGUCGCg -3'
miRNA:   3'- -CGUCCU---------UGGUCG---------CCGU---------CGCG-UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 48726 0.66 0.846929
Target:  5'- aGguGGAgacGCCGGCGacgcuGCAGCacaAGCCGa -3'
miRNA:   3'- -CguCCU---UGGUCGC-----CGUCGcg-UCGGCg -5'
14621 3' -60.1 NC_003521.1 + 77099 0.66 0.846929
Target:  5'- cGCAuGGggUC-GCGGCAcucGCGCAuGCacuCGCg -3'
miRNA:   3'- -CGU-CCuuGGuCGCCGU---CGCGU-CG---GCG- -5'
14621 3' -60.1 NC_003521.1 + 8146 0.66 0.846929
Target:  5'- gGUAGGucugCAGCGGUacAGUGCAGUuacggCGCg -3'
miRNA:   3'- -CGUCCuug-GUCGCCG--UCGCGUCG-----GCG- -5'
14621 3' -60.1 NC_003521.1 + 142205 0.66 0.846929
Target:  5'- aGgAGGAGCgAcGUGGCGGCagaAGCCGa -3'
miRNA:   3'- -CgUCCUUGgU-CGCCGUCGcg-UCGGCg -5'
14621 3' -60.1 NC_003521.1 + 38995 0.66 0.846929
Target:  5'- aCAGGcGCUGGUGGauguGGCGCugcacGGCCGUc -3'
miRNA:   3'- cGUCCuUGGUCGCCg---UCGCG-----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 224086 0.66 0.846929
Target:  5'- gGCGGGcgcgcgcGCCGGCGGUcGC-CGaacucGCCGCg -3'
miRNA:   3'- -CGUCCu------UGGUCGCCGuCGcGU-----CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 74362 0.66 0.846929
Target:  5'- cGCGGcuacGGCCAGU-GCGGCGaCGGCuCGCc -3'
miRNA:   3'- -CGUCc---UUGGUCGcCGUCGC-GUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 128858 0.66 0.846929
Target:  5'- aGCAGGAACagcGUGGCca-GCAGCUucuGCu -3'
miRNA:   3'- -CGUCCUUGgu-CGCCGucgCGUCGG---CG- -5'
14621 3' -60.1 NC_003521.1 + 239223 0.66 0.846929
Target:  5'- aCAGGcGCUGGUGGauguGGCGCugcacGGCCGUc -3'
miRNA:   3'- cGUCCuUGGUCGCCg---UCGCG-----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 127828 0.66 0.846929
Target:  5'- -aAGGuGCCcgGGUGGUaguGGCGCccGCCGCu -3'
miRNA:   3'- cgUCCuUGG--UCGCCG---UCGCGu-CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 18253 0.66 0.846929
Target:  5'- --cGGGACgAGCGGUGGUGgGGaccugcCCGCg -3'
miRNA:   3'- cguCCUUGgUCGCCGUCGCgUC------GGCG- -5'
14621 3' -60.1 NC_003521.1 + 192027 0.66 0.846929
Target:  5'- uCAGGuucugcACCGccggcgugcGCGGCAGaCGCGGCgucCGCg -3'
miRNA:   3'- cGUCCu-----UGGU---------CGCCGUC-GCGUCG---GCG- -5'
14621 3' -60.1 NC_003521.1 + 77969 0.66 0.846929
Target:  5'- --uGGAGCCGGCcGCGG-GCucGCCGUu -3'
miRNA:   3'- cguCCUUGGUCGcCGUCgCGu-CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 102808 0.66 0.846929
Target:  5'- cCAGcu-CgGGCGGCAGCaaGUAGCgGCg -3'
miRNA:   3'- cGUCcuuGgUCGCCGUCG--CGUCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.