miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 96855 0.66 0.900362
Target:  5'- -aUGGGGCggaAGGCCGggugguagcacucGCGCaGCCGGUg -3'
miRNA:   3'- acAUCUCG---UCCGGCau-----------CGCG-CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 179240 0.66 0.89788
Target:  5'- -----cGCGGGCCuucUGGCGCcugaacucgccgGCCAGCa -3'
miRNA:   3'- acaucuCGUCCGGc--AUCGCG------------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 193273 0.66 0.89788
Target:  5'- cUGcGGAGCGGguGCCGggacgGGCGUcggaGUCGGCg -3'
miRNA:   3'- -ACaUCUCGUC--CGGCa----UCGCG----CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 44356 0.66 0.89788
Target:  5'- --cGGAaCGGGCCGa---GUGCCAGCg -3'
miRNA:   3'- acaUCUcGUCCGGCaucgCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 211877 0.66 0.89788
Target:  5'- gGUAGAGgGcGCCGcgcgugguaUAGUGCGCCAu- -3'
miRNA:   3'- aCAUCUCgUcCGGC---------AUCGCGCGGUcg -5'
14622 3' -58.4 NC_003521.1 + 68491 0.66 0.89788
Target:  5'- gUGUGccacAGgAcGGCCGaGGCcuGCGCCAGCg -3'
miRNA:   3'- -ACAUc---UCgU-CCGGCaUCG--CGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 183906 0.66 0.89788
Target:  5'- gUGcUGGAgGCGGuGCUGcGGCGCugucgcgacgGCCAGCu -3'
miRNA:   3'- -AC-AUCU-CGUC-CGGCaUCGCG----------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 91616 0.66 0.89788
Target:  5'- uUGUGGgccuGGguGGCguaguccuCGUGGC-CGCCGGUg -3'
miRNA:   3'- -ACAUC----UCguCCG--------GCAUCGcGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 58818 0.66 0.89788
Target:  5'- ---cGAGCAGGCagcgCGUGGCG-GCCgugacguuacuGGCg -3'
miRNA:   3'- acauCUCGUCCG----GCAUCGCgCGG-----------UCG- -5'
14622 3' -58.4 NC_003521.1 + 195497 0.66 0.89788
Target:  5'- cGgcGAagAGGUCGUAGcCGUcgGCCAGCu -3'
miRNA:   3'- aCauCUcgUCCGGCAUC-GCG--CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 30787 0.66 0.89788
Target:  5'- -cUGGAuGUGGGCgCgGUAGCGCaccgagggcccGCCGGCg -3'
miRNA:   3'- acAUCU-CGUCCG-G-CAUCGCG-----------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 197437 0.66 0.89788
Target:  5'- --aAGAgGCcauGGCCa-GGCgGCGCCAGCg -3'
miRNA:   3'- acaUCU-CGu--CCGGcaUCG-CGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 166671 0.66 0.89788
Target:  5'- --cAGcGGCaccuGGGCCccGUGGCGCGCCAcGUc -3'
miRNA:   3'- acaUC-UCG----UCCGG--CAUCGCGCGGU-CG- -5'
14622 3' -58.4 NC_003521.1 + 102865 0.66 0.89788
Target:  5'- cGUAG-GUcuGGGCCGUgcguagcgaGGCGCagagGCgCAGCa -3'
miRNA:   3'- aCAUCuCG--UCCGGCA---------UCGCG----CG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 26104 0.66 0.897254
Target:  5'- --cGGAGUcGGCCagGUagaguucGGCGgGCCGGCu -3'
miRNA:   3'- acaUCUCGuCCGG--CA-------UCGCgCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 165970 0.66 0.891525
Target:  5'- aUGUcGuGCAGGUCGUgcAGCGUGa-GGCg -3'
miRNA:   3'- -ACAuCuCGUCCGGCA--UCGCGCggUCG- -5'
14622 3' -58.4 NC_003521.1 + 140849 0.66 0.891525
Target:  5'- gUGcUGGAGCGcuucgcggucucGGCCGaGGCGCcGCC-GCc -3'
miRNA:   3'- -AC-AUCUCGU------------CCGGCaUCGCG-CGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 164876 0.66 0.891525
Target:  5'- gUGUAacuacGAGguGGCCGaggauccgacgUAcGUGCGCgAGCa -3'
miRNA:   3'- -ACAU-----CUCguCCGGC-----------AU-CGCGCGgUCG- -5'
14622 3' -58.4 NC_003521.1 + 215054 0.66 0.891525
Target:  5'- cGUGGAGCcccuGGGCUgccugGUGGUGC-CCGGa -3'
miRNA:   3'- aCAUCUCG----UCCGG-----CAUCGCGcGGUCg -5'
14622 3' -58.4 NC_003521.1 + 140618 0.66 0.891525
Target:  5'- ---cGAGgAGGCCGUaaauauGGCGCucgugGCCuGCg -3'
miRNA:   3'- acauCUCgUCCGGCA------UCGCG-----CGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.