Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14623 | 3' | -57.7 | NC_003521.1 | + | 87167 | 0.66 | 0.919211 |
Target: 5'- uCGUGC-GCgCGgCCGUGCAGcGCuCCAc -3' miRNA: 3'- -GCACGaCG-GCgGGUAUGUCuCGuGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 86699 | 0.66 | 0.919211 |
Target: 5'- --cGCUGCCGCCCuUGCccggccgcgAGAuGgGCCGg -3' miRNA: 3'- gcaCGACGGCGGGuAUG---------UCU-CgUGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 48941 | 0.66 | 0.919211 |
Target: 5'- aCGUgGCgccGCCGCCCAguuggACGGA-CAUCGa -3' miRNA: 3'- -GCA-CGa--CGGCGGGUa----UGUCUcGUGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 130539 | 0.66 | 0.919211 |
Target: 5'- uCGUGCUGCgccaGaCCCAgaaGCAcGAGCugCu -3' miRNA: 3'- -GCACGACGg---C-GGGUa--UGU-CUCGugGu -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 138067 | 0.66 | 0.919211 |
Target: 5'- --cGCUGCCGCUC-UACcgcGuGCACCu -3' miRNA: 3'- gcaCGACGGCGGGuAUGu--CuCGUGGu -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 98150 | 0.66 | 0.91811 |
Target: 5'- -cUGCUGCCGCCgucgcugcugACGGcgcuGCGCCGa -3' miRNA: 3'- gcACGACGGCGGgua-------UGUCu---CGUGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 123517 | 0.66 | 0.914186 |
Target: 5'- --cGCUGCCGCCCGcaauccgcgucgcuUcgaacgucaguucggGCAGgugcAGCGCCAg -3' miRNA: 3'- gcaCGACGGCGGGU--------------A---------------UGUC----UCGUGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 129986 | 0.66 | 0.913617 |
Target: 5'- cCGUcGCUGCCGCUgcgCcgGCGGcGGCGCgCAa -3' miRNA: 3'- -GCA-CGACGGCGG---GuaUGUC-UCGUG-GU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 117698 | 0.66 | 0.913617 |
Target: 5'- --cGCUGCCGUacuUCGUACAGcGGC-CCGg -3' miRNA: 3'- gcaCGACGGCG---GGUAUGUC-UCGuGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 85235 | 0.66 | 0.913617 |
Target: 5'- -cUGCUGCUGCUCucguUGCugcuGCACCAc -3' miRNA: 3'- gcACGACGGCGGGu---AUGucu-CGUGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 42947 | 0.66 | 0.913045 |
Target: 5'- --cGCUGCCGCCU--GCAgcccagcGAGCGCg- -3' miRNA: 3'- gcaCGACGGCGGGuaUGU-------CUCGUGgu -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 198032 | 0.66 | 0.913045 |
Target: 5'- gCGUGCaGCCGCCgGgcUGCAcgggcaggugcuuGAGCAgCAg -3' miRNA: 3'- -GCACGaCGGCGGgU--AUGU-------------CUCGUgGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 196430 | 0.66 | 0.9078 |
Target: 5'- aGUcGCUGUCGCCCGgguCGGccGGCuGCCGc -3' miRNA: 3'- gCA-CGACGGCGGGUau-GUC--UCG-UGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 49568 | 0.66 | 0.9078 |
Target: 5'- gCG-GCUGCCGCuucCCcgAC-GAGUGCCGa -3' miRNA: 3'- -GCaCGACGGCG---GGuaUGuCUCGUGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 188165 | 0.66 | 0.9078 |
Target: 5'- cCGcUGCUGCCGCUCucugaagcGUGCcgcGAGgGCCGa -3' miRNA: 3'- -GC-ACGACGGCGGG--------UAUGu--CUCgUGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 49838 | 0.66 | 0.9078 |
Target: 5'- cCGUGCagacgGCCGUCCAggugGCGGuGCAaguaagugcCCAu -3' miRNA: 3'- -GCACGa----CGGCGGGUa---UGUCuCGU---------GGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 88529 | 0.66 | 0.896141 |
Target: 5'- cCGUGCaggcgcaccgaaacgGCCuCCUcgggGCAGGGCACCAg -3' miRNA: 3'- -GCACGa--------------CGGcGGGua--UGUCUCGUGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 216460 | 0.66 | 0.895506 |
Target: 5'- --aGCgaaGCCGCCCAggGCAGA-UACCGc -3' miRNA: 3'- gcaCGa--CGGCGGGUa-UGUCUcGUGGU- -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 124155 | 0.66 | 0.895506 |
Target: 5'- --cGCcGCCGCugCCGUGCAGgcgauAGCGCCu -3' miRNA: 3'- gcaCGaCGGCG--GGUAUGUC-----UCGUGGu -5' |
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14623 | 3' | -57.7 | NC_003521.1 | + | 20632 | 0.66 | 0.895506 |
Target: 5'- uGUGCUcggagaGCCGCgCGcUGguGGGCGCCu -3' miRNA: 3'- gCACGA------CGGCGgGU-AUguCUCGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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