miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 3' -57.7 NC_003521.1 + 87167 0.66 0.919211
Target:  5'- uCGUGC-GCgCGgCCGUGCAGcGCuCCAc -3'
miRNA:   3'- -GCACGaCG-GCgGGUAUGUCuCGuGGU- -5'
14623 3' -57.7 NC_003521.1 + 86699 0.66 0.919211
Target:  5'- --cGCUGCCGCCCuUGCccggccgcgAGAuGgGCCGg -3'
miRNA:   3'- gcaCGACGGCGGGuAUG---------UCU-CgUGGU- -5'
14623 3' -57.7 NC_003521.1 + 48941 0.66 0.919211
Target:  5'- aCGUgGCgccGCCGCCCAguuggACGGA-CAUCGa -3'
miRNA:   3'- -GCA-CGa--CGGCGGGUa----UGUCUcGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 130539 0.66 0.919211
Target:  5'- uCGUGCUGCgccaGaCCCAgaaGCAcGAGCugCu -3'
miRNA:   3'- -GCACGACGg---C-GGGUa--UGU-CUCGugGu -5'
14623 3' -57.7 NC_003521.1 + 138067 0.66 0.919211
Target:  5'- --cGCUGCCGCUC-UACcgcGuGCACCu -3'
miRNA:   3'- gcaCGACGGCGGGuAUGu--CuCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 98150 0.66 0.91811
Target:  5'- -cUGCUGCCGCCgucgcugcugACGGcgcuGCGCCGa -3'
miRNA:   3'- gcACGACGGCGGgua-------UGUCu---CGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 123517 0.66 0.914186
Target:  5'- --cGCUGCCGCCCGcaauccgcgucgcuUcgaacgucaguucggGCAGgugcAGCGCCAg -3'
miRNA:   3'- gcaCGACGGCGGGU--------------A---------------UGUC----UCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 129986 0.66 0.913617
Target:  5'- cCGUcGCUGCCGCUgcgCcgGCGGcGGCGCgCAa -3'
miRNA:   3'- -GCA-CGACGGCGG---GuaUGUC-UCGUG-GU- -5'
14623 3' -57.7 NC_003521.1 + 117698 0.66 0.913617
Target:  5'- --cGCUGCCGUacuUCGUACAGcGGC-CCGg -3'
miRNA:   3'- gcaCGACGGCG---GGUAUGUC-UCGuGGU- -5'
14623 3' -57.7 NC_003521.1 + 85235 0.66 0.913617
Target:  5'- -cUGCUGCUGCUCucguUGCugcuGCACCAc -3'
miRNA:   3'- gcACGACGGCGGGu---AUGucu-CGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 42947 0.66 0.913045
Target:  5'- --cGCUGCCGCCU--GCAgcccagcGAGCGCg- -3'
miRNA:   3'- gcaCGACGGCGGGuaUGU-------CUCGUGgu -5'
14623 3' -57.7 NC_003521.1 + 198032 0.66 0.913045
Target:  5'- gCGUGCaGCCGCCgGgcUGCAcgggcaggugcuuGAGCAgCAg -3'
miRNA:   3'- -GCACGaCGGCGGgU--AUGU-------------CUCGUgGU- -5'
14623 3' -57.7 NC_003521.1 + 196430 0.66 0.9078
Target:  5'- aGUcGCUGUCGCCCGgguCGGccGGCuGCCGc -3'
miRNA:   3'- gCA-CGACGGCGGGUau-GUC--UCG-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 49568 0.66 0.9078
Target:  5'- gCG-GCUGCCGCuucCCcgAC-GAGUGCCGa -3'
miRNA:   3'- -GCaCGACGGCG---GGuaUGuCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 188165 0.66 0.9078
Target:  5'- cCGcUGCUGCCGCUCucugaagcGUGCcgcGAGgGCCGa -3'
miRNA:   3'- -GC-ACGACGGCGGG--------UAUGu--CUCgUGGU- -5'
14623 3' -57.7 NC_003521.1 + 49838 0.66 0.9078
Target:  5'- cCGUGCagacgGCCGUCCAggugGCGGuGCAaguaagugcCCAu -3'
miRNA:   3'- -GCACGa----CGGCGGGUa---UGUCuCGU---------GGU- -5'
14623 3' -57.7 NC_003521.1 + 88529 0.66 0.896141
Target:  5'- cCGUGCaggcgcaccgaaacgGCCuCCUcgggGCAGGGCACCAg -3'
miRNA:   3'- -GCACGa--------------CGGcGGGua--UGUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 216460 0.66 0.895506
Target:  5'- --aGCgaaGCCGCCCAggGCAGA-UACCGc -3'
miRNA:   3'- gcaCGa--CGGCGGGUa-UGUCUcGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 124155 0.66 0.895506
Target:  5'- --cGCcGCCGCugCCGUGCAGgcgauAGCGCCu -3'
miRNA:   3'- gcaCGaCGGCG--GGUAUGUC-----UCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 20632 0.66 0.895506
Target:  5'- uGUGCUcggagaGCCGCgCGcUGguGGGCGCCu -3'
miRNA:   3'- gCACGA------CGGCGgGU-AUguCUCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.