miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 5' -59.4 NC_003521.1 + 111251 0.65 0.890757
Target:  5'- gCGgcGCGGcggagcagccaucgUCggGCCCgccguGCCAGCGCCGCc -3'
miRNA:   3'- -GCauCGCC--------------AG--CGGG-----UGGUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 197696 0.66 0.886909
Target:  5'- -cUAGuCGGgaagaacgcugucaaCGCCCACCAcCACCACa -3'
miRNA:   3'- gcAUC-GCCa--------------GCGGGUGGUcGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 148780 0.66 0.886261
Target:  5'- --cGGCGGUCGCgCCGa-GGaGCCGCGg -3'
miRNA:   3'- gcaUCGCCAGCG-GGUggUCgUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 178686 0.66 0.886261
Target:  5'- --gGGUGGUCGCggCCGCUcaGGUACCAgGu -3'
miRNA:   3'- gcaUCGCCAGCG--GGUGG--UCGUGGUgC- -5'
14623 5' -59.4 NC_003521.1 + 240464 0.66 0.886261
Target:  5'- --cAGCGGUCGCaggcgCCGCCuccGGCAgcUCACGc -3'
miRNA:   3'- gcaUCGCCAGCG-----GGUGG---UCGU--GGUGC- -5'
14623 5' -59.4 NC_003521.1 + 51466 0.66 0.886261
Target:  5'- aGUAGCGGUCaucugcCCCGgCAGC-CCGa- -3'
miRNA:   3'- gCAUCGCCAGc-----GGGUgGUCGuGGUgc -5'
14623 5' -59.4 NC_003521.1 + 120966 0.66 0.886261
Target:  5'- gCGgGGCGGUUugcgGUCCGCCAGCucguCCuCGu -3'
miRNA:   3'- -GCaUCGCCAG----CGGGUGGUCGu---GGuGC- -5'
14623 5' -59.4 NC_003521.1 + 40236 0.66 0.886261
Target:  5'- --cAGCGGUCGCaggcgCCGCCuccGGCAgcUCACGc -3'
miRNA:   3'- gcaUCGCCAGCG-----GGUGG---UCGU--GGUGC- -5'
14623 5' -59.4 NC_003521.1 + 91924 0.66 0.886261
Target:  5'- cCGcGGCGG-CGCUCcUCGGCgucgGCCACGg -3'
miRNA:   3'- -GCaUCGCCaGCGGGuGGUCG----UGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 25368 0.66 0.886261
Target:  5'- uCGUGGCucccUCgGCCUggcGCCAGCACCcGCGg -3'
miRNA:   3'- -GCAUCGcc--AG-CGGG---UGGUCGUGG-UGC- -5'
14623 5' -59.4 NC_003521.1 + 74589 0.66 0.886261
Target:  5'- gCGgcGCGG-CGUCCcgcgGCCGGCgcgccucgccGCCGCGc -3'
miRNA:   3'- -GCauCGCCaGCGGG----UGGUCG----------UGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 180905 0.66 0.886261
Target:  5'- --aGGUGGgaGCCCACCuuGUACUGCGg -3'
miRNA:   3'- gcaUCGCCagCGGGUGGu-CGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 160732 0.66 0.886261
Target:  5'- ---cGUGGUCGCgCCGUCGGCACCccCGa -3'
miRNA:   3'- gcauCGCCAGCG-GGUGGUCGUGGu-GC- -5'
14623 5' -59.4 NC_003521.1 + 34846 0.66 0.885611
Target:  5'- gGUagGGCGaGUgagagcCGCCCACCacguagaAGCACUGCGa -3'
miRNA:   3'- gCA--UCGC-CA------GCGGGUGG-------UCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 71290 0.66 0.885611
Target:  5'- ---cGCGGcacggGCCCcuggggcACCAGCACCugGg -3'
miRNA:   3'- gcauCGCCag---CGGG-------UGGUCGUGGugC- -5'
14623 5' -59.4 NC_003521.1 + 163814 0.66 0.882329
Target:  5'- cCGgcGUGGUCaacggcaugauGCcgugccugcccaucgCCGCCAGCAUCACGc -3'
miRNA:   3'- -GCauCGCCAG-----------CG---------------GGUGGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 90833 0.66 0.879668
Target:  5'- uCGUgcGGCGGgugCGCgCCGCCcguGCugcugcugACCACGg -3'
miRNA:   3'- -GCA--UCGCCa--GCG-GGUGGu--CG--------UGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 91336 0.66 0.879668
Target:  5'- gCGcAGCGG-CGUCUGuCCGGCgaaGCCGCGa -3'
miRNA:   3'- -GCaUCGCCaGCGGGU-GGUCG---UGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 154467 0.66 0.879668
Target:  5'- ---cGCuGUUGgUCACCGGCACCGCc -3'
miRNA:   3'- gcauCGcCAGCgGGUGGUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 74316 0.66 0.879668
Target:  5'- cCGUGcucuuCGGUCGCCUGCacccuCAGCACCugcACGa -3'
miRNA:   3'- -GCAUc----GCCAGCGGGUG-----GUCGUGG---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.