miRNA display CGI


Results 1 - 20 of 255 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 16032 0.66 0.842493
Target:  5'- aCGCGCGucCCGCaCgacgUGGUGCgggcgcUGCUGCa -3'
miRNA:   3'- -GCGCGU--GGUG-Ga---GCCGCGac----ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 21934 0.66 0.842493
Target:  5'- gGCGgGCgGCCUCGG-GCUGgaGCaguggGCg -3'
miRNA:   3'- gCGCgUGgUGGAGCCgCGACa-CGa----CG- -5'
14624 5' -60.4 NC_003521.1 + 95829 0.66 0.842493
Target:  5'- gCGCGCGagGCCUCGGUGgcaUGccGCUGg -3'
miRNA:   3'- -GCGCGUggUGGAGCCGCg--ACa-CGACg -5'
14624 5' -60.4 NC_003521.1 + 180149 0.66 0.842493
Target:  5'- aGCaGCGCCACCUCGuCGUccGUGaaGCc -3'
miRNA:   3'- gCG-CGUGGUGGAGCcGCGa-CACgaCG- -5'
14624 5' -60.4 NC_003521.1 + 196201 0.66 0.842493
Target:  5'- gGCGCAUCAUcugcagCUCGaGCGUgUGUcgcaGCUGCa -3'
miRNA:   3'- gCGCGUGGUG------GAGC-CGCG-ACA----CGACG- -5'
14624 5' -60.4 NC_003521.1 + 194896 0.66 0.842493
Target:  5'- cCGCGagAUCGCCUgGGCGaucuuUGUGC-GCa -3'
miRNA:   3'- -GCGCg-UGGUGGAgCCGCg----ACACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 24204 0.66 0.842493
Target:  5'- gCGCGC-CCGCCUacCGuCGaCUGcUGCUGUc -3'
miRNA:   3'- -GCGCGuGGUGGA--GCcGC-GAC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 19562 0.66 0.840191
Target:  5'- cCGCGUgcucgguggucuucACCACCaCGGUccaccuGCUGUGCUa- -3'
miRNA:   3'- -GCGCG--------------UGGUGGaGCCG------CGACACGAcg -5'
14624 5' -60.4 NC_003521.1 + 121617 0.66 0.835539
Target:  5'- gGCGCucACCACCU-GGCGCagcgccacguccuugGUGUUGa -3'
miRNA:   3'- gCGCG--UGGUGGAgCCGCGa--------------CACGACg -5'
14624 5' -60.4 NC_003521.1 + 167464 0.66 0.834758
Target:  5'- aGCGUGCUgaggGCCgugcgCGGCGCguaGUUGCa -3'
miRNA:   3'- gCGCGUGG----UGGa----GCCGCGacaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 107266 0.66 0.834758
Target:  5'- uGUGCGCCACCU-GGUGUgUGUGUc-- -3'
miRNA:   3'- gCGCGUGGUGGAgCCGCG-ACACGacg -5'
14624 5' -60.4 NC_003521.1 + 85173 0.66 0.834758
Target:  5'- cCGC-CGCCACCcagcaCGGCGCUu--CUGCu -3'
miRNA:   3'- -GCGcGUGGUGGa----GCCGCGAcacGACG- -5'
14624 5' -60.4 NC_003521.1 + 117267 0.66 0.834758
Target:  5'- cCGC-CACCGCCgucgUCGGCcGUgGUGCcgGCu -3'
miRNA:   3'- -GCGcGUGGUGG----AGCCG-CGaCACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 142224 0.66 0.834758
Target:  5'- uCGC-CAUgGCCUCGuCGCUGcGCUcGCg -3'
miRNA:   3'- -GCGcGUGgUGGAGCcGCGACaCGA-CG- -5'
14624 5' -60.4 NC_003521.1 + 181250 0.66 0.827656
Target:  5'- gGCGCGCUucucggacgaaACCcccgCGGCGcCggacgcgggaaagggGUGCUGCg -3'
miRNA:   3'- gCGCGUGG-----------UGGa---GCCGC-Ga--------------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 160774 0.66 0.826859
Target:  5'- gCGCGUGCCGCCggCGGCacGCgg-GC-GCg -3'
miRNA:   3'- -GCGCGUGGUGGa-GCCG--CGacaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 117197 0.66 0.826859
Target:  5'- uGCGCAUCAUCaCGcCGCUGcuacggcgGCUGCc -3'
miRNA:   3'- gCGCGUGGUGGaGCcGCGACa-------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 213377 0.66 0.826859
Target:  5'- gGCGCucACgGCCgaauUCGGC-CUGgGCUGCc -3'
miRNA:   3'- gCGCG--UGgUGG----AGCCGcGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 36285 0.66 0.826859
Target:  5'- gGCGCuGCgCACCUCGGacCGCgacaacuacggGcGCUGCg -3'
miRNA:   3'- gCGCG-UG-GUGGAGCC--GCGa----------CaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 187876 0.66 0.826859
Target:  5'- gGCGguCACCACCUCGG-GCggcacggGCgGCg -3'
miRNA:   3'- gCGC--GUGGUGGAGCCgCGaca----CGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.