miRNA display CGI


Results 41 - 60 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 172051 0.72 0.534415
Target:  5'- uCUAGCGCGCUGAggauguucugcgUCAggaCCGUcagCGGCGg -3'
miRNA:   3'- -GGUCGCGCGACU------------AGUg--GGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 171546 0.68 0.769326
Target:  5'- gCuGCGCGCUGGUUAaacagaCCGCuugccacgUCGGCc -3'
miRNA:   3'- gGuCGCGCGACUAGUg-----GGCG--------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 170059 0.66 0.858263
Target:  5'- uCCAcGUGCaGCUGGUgAUCgGCcgCGGCGc -3'
miRNA:   3'- -GGU-CGCG-CGACUAgUGGgCGa-GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 169027 0.66 0.828013
Target:  5'- uUguGCGCGCgccGGUCaaGCUgGuCUCGGCGc -3'
miRNA:   3'- -GguCGCGCGa--CUAG--UGGgC-GAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 167603 0.7 0.610038
Target:  5'- gCGGCGCGCaGAggCGCCgcaggCGCUCGGgGu -3'
miRNA:   3'- gGUCGCGCGaCUa-GUGG-----GCGAGCCgC- -5'
14625 3' -60.2 NC_003521.1 + 167463 0.7 0.629203
Target:  5'- -gAGCGUGCUGAggGCCgUGCgCGGCGc -3'
miRNA:   3'- ggUCGCGCGACUagUGG-GCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 166690 0.66 0.843475
Target:  5'- -uGGCGCGCcacGUCGuCCUGCaCGGCGc -3'
miRNA:   3'- ggUCGCGCGac-UAGU-GGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 165986 0.67 0.803665
Target:  5'- gCAGCgugagGCGCgGGaCGCCgucgCGCUCGGCGc -3'
miRNA:   3'- gGUCG-----CGCGaCUaGUGG----GCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 163009 0.67 0.795267
Target:  5'- -gAGCGCGCUGcUCACCaugaucuGCgagaaCGGCa -3'
miRNA:   3'- ggUCGCGCGACuAGUGGg------CGa----GCCGc -5'
14625 3' -60.2 NC_003521.1 + 162591 0.67 0.820045
Target:  5'- gCCGGCuGCGgUGG-CACUCGCUCGaCa -3'
miRNA:   3'- -GGUCG-CGCgACUaGUGGGCGAGCcGc -5'
14625 3' -60.2 NC_003521.1 + 158072 0.68 0.733272
Target:  5'- gCCGGuCGCGCgUGAUCucguCCCGCaagCGGa- -3'
miRNA:   3'- -GGUC-GCGCG-ACUAGu---GGGCGa--GCCgc -5'
14625 3' -60.2 NC_003521.1 + 156158 0.67 0.803665
Target:  5'- gCUGGCGCuGCUGcgaCGCCUGUgCGGCa -3'
miRNA:   3'- -GGUCGCG-CGACua-GUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 155431 0.69 0.686529
Target:  5'- cUguGCGaGCUGGcCgACCCGCUgGGCGa -3'
miRNA:   3'- -GguCGCgCGACUaG-UGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 155146 0.71 0.562482
Target:  5'- gCGGCGCguGCUGGaCGCCgGCUCGGa- -3'
miRNA:   3'- gGUCGCG--CGACUaGUGGgCGAGCCgc -5'
14625 3' -60.2 NC_003521.1 + 155058 0.67 0.811926
Target:  5'- aCGGCugcgagGCGCUGGcCACCuCGCUCauGGCc -3'
miRNA:   3'- gGUCG------CGCGACUaGUGG-GCGAG--CCGc -5'
14625 3' -60.2 NC_003521.1 + 154577 0.7 0.610995
Target:  5'- cUCAGCGCGauucucaaccgCACgCGCUCGGCGc -3'
miRNA:   3'- -GGUCGCGCgacua------GUGgGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 154148 0.7 0.648376
Target:  5'- gCCAGauacgacgaCGCGCUGAUCcucaACCUGUcgUCGGCc -3'
miRNA:   3'- -GGUC---------GCGCGACUAG----UGGGCG--AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 153893 0.66 0.863272
Target:  5'- uCCAGCGCGCgguagGGgaacagCGCCgCGUgcagcuuccacuccUCGGCc -3'
miRNA:   3'- -GGUCGCGCGa----CUa-----GUGG-GCG--------------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 152610 0.67 0.803665
Target:  5'- cUCGGCGCccugGUUGGUCACCaggcgGCgcaGGCGg -3'
miRNA:   3'- -GGUCGCG----CGACUAGUGGg----CGag-CCGC- -5'
14625 3' -60.2 NC_003521.1 + 151748 0.7 0.613868
Target:  5'- cCCAGgaaucCGCGCUGucauugucgcccguUCACCCGCaccaugagCGGCGa -3'
miRNA:   3'- -GGUC-----GCGCGACu-------------AGUGGGCGa-------GCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.