Results 1 - 20 of 195 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 127406 | 0.66 | 0.863875 |
Target: 5'- gGCggugGUcgUGCAGCGCGUucacguaggccgccaGCgGCUCGuCGg -3' miRNA: 3'- aCGa---CA--ACGUCGUGCG---------------CGgCGAGC-GC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 91456 | 0.66 | 0.860966 |
Target: 5'- aUGCgc--GCAuaCGCGCGCaGCUCGCGg -3' miRNA: 3'- -ACGacaaCGUc-GUGCGCGgCGAGCGC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 191141 | 0.66 | 0.860966 |
Target: 5'- gGCUGa--CGGCGacaGCGCCGCgcUCGCc -3' miRNA: 3'- aCGACaacGUCGUg--CGCGGCG--AGCGc -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 65361 | 0.66 | 0.860966 |
Target: 5'- gUGCUGUccggGgAGacgGCGCGCCGCcgaUCGUa -3' miRNA: 3'- -ACGACAa---CgUCg--UGCGCGGCG---AGCGc -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 37276 | 0.66 | 0.860966 |
Target: 5'- cGCUGacGguGCACGCGCC-CUaCGaCa -3' miRNA: 3'- aCGACaaCguCGUGCGCGGcGA-GC-Gc -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 35820 | 0.66 | 0.860234 |
Target: 5'- gGCgagaaccugGCGGUGCGCGCCGaggauguagaguucaUCGCGg -3' miRNA: 3'- aCGacaa-----CGUCGUGCGCGGCg--------------AGCGC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 116886 | 0.66 | 0.860234 |
Target: 5'- cGCgGcUGCGGCgGCGCGCCGgcgggagaccccuUUCGCu -3' miRNA: 3'- aCGaCaACGUCG-UGCGCGGC-------------GAGCGc -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 89046 | 0.66 | 0.856546 |
Target: 5'- aUGCUGUaccUGCAG-GCGCGCCacaGCUgccuggagaucgucaCGCGc -3' miRNA: 3'- -ACGACA---ACGUCgUGCGCGG---CGA---------------GCGC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 136017 | 0.66 | 0.853562 |
Target: 5'- cGCUGUacGCcuGCACGCGgUGCUucCGCa -3' miRNA: 3'- aCGACAa-CGu-CGUGCGCgGCGA--GCGc -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 46191 | 0.66 | 0.853562 |
Target: 5'- gGCUGcacGguGCugGUGUCGUgCGCGc -3' miRNA: 3'- aCGACaa-CguCGugCGCGGCGaGCGC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 97348 | 0.66 | 0.853562 |
Target: 5'- cGCUGUgcuUGCgcgcgaucuugAGCACGCGCUgGCggucgaGCGg -3' miRNA: 3'- aCGACA---ACG-----------UCGUGCGCGG-CGag----CGC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 169640 | 0.66 | 0.853562 |
Target: 5'- gUGCUGUUGUGGUcguagAgGUGCCGUUCa-- -3' miRNA: 3'- -ACGACAACGUCG-----UgCGCGGCGAGcgc -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 225494 | 0.66 | 0.853562 |
Target: 5'- cUGCUGcacCAGCGCGCugaucacCCGCUCgGCGc -3' miRNA: 3'- -ACGACaacGUCGUGCGc------GGCGAG-CGC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 112396 | 0.66 | 0.853562 |
Target: 5'- gGCUGgcGCAGUGCGCcgaccgGCCGCcuuUCGg- -3' miRNA: 3'- aCGACaaCGUCGUGCG------CGGCG---AGCgc -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 198800 | 0.66 | 0.853562 |
Target: 5'- cUGCgugGUgccgGCGGCGucuguCGUGCCGC-CGUGu -3' miRNA: 3'- -ACGa--CAa---CGUCGU-----GCGCGGCGaGCGC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 162675 | 0.66 | 0.853562 |
Target: 5'- gUGCcucGUUcGCGGC-CGcCGCCGCUaaCGCGc -3' miRNA: 3'- -ACGa--CAA-CGUCGuGC-GCGGCGA--GCGC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 36701 | 0.66 | 0.853562 |
Target: 5'- aGCUGgugaUGguGCccuuCGUGCCGCaCGCc -3' miRNA: 3'- aCGACa---ACguCGu---GCGCGGCGaGCGc -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 122546 | 0.66 | 0.853562 |
Target: 5'- gUGCUGcUGCuaccgccGCugGUGCCgGCUacCGCGu -3' miRNA: 3'- -ACGACaACGu------CGugCGCGG-CGA--GCGC- -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 18165 | 0.66 | 0.853562 |
Target: 5'- aUGCUGg-GCAGCGuggagGCGCUGCgCGCc -3' miRNA: 3'- -ACGACaaCGUCGUg----CGCGGCGaGCGc -5' |
|||||||
14626 | 5' | -59.4 | NC_003521.1 | + | 127001 | 0.66 | 0.845973 |
Target: 5'- cGCUGcccgacgugGCGGUgcccgACGaCGCCGC-CGCGg -3' miRNA: 3'- aCGACaa-------CGUCG-----UGC-GCGGCGaGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home