miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 127406 0.66 0.863875
Target:  5'- gGCggugGUcgUGCAGCGCGUucacguaggccgccaGCgGCUCGuCGg -3'
miRNA:   3'- aCGa---CA--ACGUCGUGCG---------------CGgCGAGC-GC- -5'
14626 5' -59.4 NC_003521.1 + 37276 0.66 0.860966
Target:  5'- cGCUGacGguGCACGCGCC-CUaCGaCa -3'
miRNA:   3'- aCGACaaCguCGUGCGCGGcGA-GC-Gc -5'
14626 5' -59.4 NC_003521.1 + 65361 0.66 0.860966
Target:  5'- gUGCUGUccggGgAGacgGCGCGCCGCcgaUCGUa -3'
miRNA:   3'- -ACGACAa---CgUCg--UGCGCGGCG---AGCGc -5'
14626 5' -59.4 NC_003521.1 + 191141 0.66 0.860966
Target:  5'- gGCUGa--CGGCGacaGCGCCGCgcUCGCc -3'
miRNA:   3'- aCGACaacGUCGUg--CGCGGCG--AGCGc -5'
14626 5' -59.4 NC_003521.1 + 91456 0.66 0.860966
Target:  5'- aUGCgc--GCAuaCGCGCGCaGCUCGCGg -3'
miRNA:   3'- -ACGacaaCGUc-GUGCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 35820 0.66 0.860234
Target:  5'- gGCgagaaccugGCGGUGCGCGCCGaggauguagaguucaUCGCGg -3'
miRNA:   3'- aCGacaa-----CGUCGUGCGCGGCg--------------AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 116886 0.66 0.860234
Target:  5'- cGCgGcUGCGGCgGCGCGCCGgcgggagaccccuUUCGCu -3'
miRNA:   3'- aCGaCaACGUCG-UGCGCGGC-------------GAGCGc -5'
14626 5' -59.4 NC_003521.1 + 89046 0.66 0.856546
Target:  5'- aUGCUGUaccUGCAG-GCGCGCCacaGCUgccuggagaucgucaCGCGc -3'
miRNA:   3'- -ACGACA---ACGUCgUGCGCGG---CGA---------------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 122546 0.66 0.853562
Target:  5'- gUGCUGcUGCuaccgccGCugGUGCCgGCUacCGCGu -3'
miRNA:   3'- -ACGACaACGu------CGugCGCGG-CGA--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 169640 0.66 0.853562
Target:  5'- gUGCUGUUGUGGUcguagAgGUGCCGUUCa-- -3'
miRNA:   3'- -ACGACAACGUCG-----UgCGCGGCGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 225494 0.66 0.853562
Target:  5'- cUGCUGcacCAGCGCGCugaucacCCGCUCgGCGc -3'
miRNA:   3'- -ACGACaacGUCGUGCGc------GGCGAG-CGC- -5'
14626 5' -59.4 NC_003521.1 + 198800 0.66 0.853562
Target:  5'- cUGCgugGUgccgGCGGCGucuguCGUGCCGC-CGUGu -3'
miRNA:   3'- -ACGa--CAa---CGUCGU-----GCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 112396 0.66 0.853562
Target:  5'- gGCUGgcGCAGUGCGCcgaccgGCCGCcuuUCGg- -3'
miRNA:   3'- aCGACaaCGUCGUGCG------CGGCG---AGCgc -5'
14626 5' -59.4 NC_003521.1 + 136017 0.66 0.853562
Target:  5'- cGCUGUacGCcuGCACGCGgUGCUucCGCa -3'
miRNA:   3'- aCGACAa-CGu-CGUGCGCgGCGA--GCGc -5'
14626 5' -59.4 NC_003521.1 + 97348 0.66 0.853562
Target:  5'- cGCUGUgcuUGCgcgcgaucuugAGCACGCGCUgGCggucgaGCGg -3'
miRNA:   3'- aCGACA---ACG-----------UCGUGCGCGG-CGag----CGC- -5'
14626 5' -59.4 NC_003521.1 + 36701 0.66 0.853562
Target:  5'- aGCUGgugaUGguGCccuuCGUGCCGCaCGCc -3'
miRNA:   3'- aCGACa---ACguCGu---GCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 46191 0.66 0.853562
Target:  5'- gGCUGcacGguGCugGUGUCGUgCGCGc -3'
miRNA:   3'- aCGACaa-CguCGugCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 18165 0.66 0.853562
Target:  5'- aUGCUGg-GCAGCGuggagGCGCUGCgCGCc -3'
miRNA:   3'- -ACGACaaCGUCGUg----CGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 162675 0.66 0.853562
Target:  5'- gUGCcucGUUcGCGGC-CGcCGCCGCUaaCGCGc -3'
miRNA:   3'- -ACGa--CAA-CGUCGuGC-GCGGCGA--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 127001 0.66 0.845973
Target:  5'- cGCUGcccgacgugGCGGUgcccgACGaCGCCGC-CGCGg -3'
miRNA:   3'- aCGACaa-------CGUCG-----UGC-GCGGCGaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.