miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 213185 0.66 0.991604
Target:  5'- uGCGCGggUaaGGaugGAAGGGGGUCg -3'
miRNA:   3'- uCGUGCuuGagCCgcaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 187045 0.66 0.991604
Target:  5'- aAGUGCG-GCUaacgGGCG-GGAAGGGuGCCa -3'
miRNA:   3'- -UCGUGCuUGAg---CCGCaCUUUCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 136867 0.66 0.991604
Target:  5'- uGCACGGACUCG-CG-GcgGGuGGCg -3'
miRNA:   3'- uCGUGCUUGAGCcGCaCuuUCuCCGg -5'
14631 3' -53.6 NC_003521.1 + 128627 0.66 0.991604
Target:  5'- gAGCACGAAgUUGcCGU--AGGuGGCCg -3'
miRNA:   3'- -UCGUGCUUgAGCcGCAcuUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 211719 0.66 0.991604
Target:  5'- cGCGCGGAUggugCGGC--GAAAGuGcGCCa -3'
miRNA:   3'- uCGUGCUUGa---GCCGcaCUUUCuC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 218423 0.66 0.991604
Target:  5'- cAGCAUGGccaGCgacagCGGCGgcaccacGGAGGAcauGGCCg -3'
miRNA:   3'- -UCGUGCU---UGa----GCCGCa------CUUUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 88036 0.66 0.990447
Target:  5'- cAGCuuGAGCUCGuugagcGCGcGGAuGAGGUCg -3'
miRNA:   3'- -UCGugCUUGAGC------CGCaCUUuCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 44246 0.66 0.990447
Target:  5'- --gGCGAGCaggUCgGGCGUcGGGGAGGUCa -3'
miRNA:   3'- ucgUGCUUG---AG-CCGCAcUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 116676 0.66 0.990447
Target:  5'- uGCACGGcagCGGCGgc--GGAGGCa -3'
miRNA:   3'- uCGUGCUugaGCCGCacuuUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 197353 0.66 0.990325
Target:  5'- cAGCACGGccgccgcGCU-GGCccgcuGUGAGAGuuccaGGGCCg -3'
miRNA:   3'- -UCGUGCU-------UGAgCCG-----CACUUUC-----UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 54755 0.66 0.990325
Target:  5'- uGCACguaGAACUUGGUGagguccuUGcuGGAGGUCa -3'
miRNA:   3'- uCGUG---CUUGAGCCGC-------ACuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 124279 0.66 0.990202
Target:  5'- aGGCGCGGcugACgaucuccagaaagcgCGGCGaggUGAcgcaacccaggcagAAGAGGCCg -3'
miRNA:   3'- -UCGUGCU---UGa--------------GCCGC---ACU--------------UUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 126436 0.66 0.989951
Target:  5'- cAGCACcAGCgacacCGGCGaGAucuuguacagcauGGAGGCCa -3'
miRNA:   3'- -UCGUGcUUGa----GCCGCaCUu------------UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 187894 0.66 0.989169
Target:  5'- cGGCACGGg--CGGCG-GggGcAGGUCg -3'
miRNA:   3'- -UCGUGCUugaGCCGCaCuuUcUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 99632 0.66 0.989169
Target:  5'- cGCACGGgcucguaaaagaGCUUggguagcagGGCGgGGAAGGGGCa -3'
miRNA:   3'- uCGUGCU------------UGAG---------CCGCaCUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 177909 0.66 0.988761
Target:  5'- cGGgGCGAGCgggagGGCGUcgucgggagggaugGGGAGuGGCCg -3'
miRNA:   3'- -UCgUGCUUGag---CCGCA--------------CUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 130759 0.66 0.987761
Target:  5'- gGGCGCGAGCgccgcgcCGGgGgagcagaaagGGAAGAagacGGCCa -3'
miRNA:   3'- -UCGUGCUUGa------GCCgCa---------CUUUCU----CCGG- -5'
14631 3' -53.6 NC_003521.1 + 122700 0.66 0.987761
Target:  5'- uGgGCGu-CUCGGCGggGcuGGAGGCg -3'
miRNA:   3'- uCgUGCuuGAGCCGCa-CuuUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 96651 0.66 0.987761
Target:  5'- cGCGCGGcaggcggcGC-CGGCGUGcuuGAAGAGcaacGCCu -3'
miRNA:   3'- uCGUGCU--------UGaGCCGCAC---UUUCUC----CGG- -5'
14631 3' -53.6 NC_003521.1 + 127822 0.66 0.987761
Target:  5'- aGGCGCGcAGCUCG---UGGAAG-GGCCc -3'
miRNA:   3'- -UCGUGC-UUGAGCcgcACUUUCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.