Results 1 - 20 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14631 | 3' | -53.6 | NC_003521.1 | + | 213185 | 0.66 | 0.991604 |
Target: 5'- uGCGCGggUaaGGaugGAAGGGGGUCg -3' miRNA: 3'- uCGUGCuuGagCCgcaCUUUCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 187045 | 0.66 | 0.991604 |
Target: 5'- aAGUGCG-GCUaacgGGCG-GGAAGGGuGCCa -3' miRNA: 3'- -UCGUGCuUGAg---CCGCaCUUUCUC-CGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 136867 | 0.66 | 0.991604 |
Target: 5'- uGCACGGACUCG-CG-GcgGGuGGCg -3' miRNA: 3'- uCGUGCUUGAGCcGCaCuuUCuCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 128627 | 0.66 | 0.991604 |
Target: 5'- gAGCACGAAgUUGcCGU--AGGuGGCCg -3' miRNA: 3'- -UCGUGCUUgAGCcGCAcuUUCuCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 211719 | 0.66 | 0.991604 |
Target: 5'- cGCGCGGAUggugCGGC--GAAAGuGcGCCa -3' miRNA: 3'- uCGUGCUUGa---GCCGcaCUUUCuC-CGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 218423 | 0.66 | 0.991604 |
Target: 5'- cAGCAUGGccaGCgacagCGGCGgcaccacGGAGGAcauGGCCg -3' miRNA: 3'- -UCGUGCU---UGa----GCCGCa------CUUUCU---CCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 88036 | 0.66 | 0.990447 |
Target: 5'- cAGCuuGAGCUCGuugagcGCGcGGAuGAGGUCg -3' miRNA: 3'- -UCGugCUUGAGC------CGCaCUUuCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 44246 | 0.66 | 0.990447 |
Target: 5'- --gGCGAGCaggUCgGGCGUcGGGGAGGUCa -3' miRNA: 3'- ucgUGCUUG---AG-CCGCAcUUUCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 116676 | 0.66 | 0.990447 |
Target: 5'- uGCACGGcagCGGCGgc--GGAGGCa -3' miRNA: 3'- uCGUGCUugaGCCGCacuuUCUCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 197353 | 0.66 | 0.990325 |
Target: 5'- cAGCACGGccgccgcGCU-GGCccgcuGUGAGAGuuccaGGGCCg -3' miRNA: 3'- -UCGUGCU-------UGAgCCG-----CACUUUC-----UCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 54755 | 0.66 | 0.990325 |
Target: 5'- uGCACguaGAACUUGGUGagguccuUGcuGGAGGUCa -3' miRNA: 3'- uCGUG---CUUGAGCCGC-------ACuuUCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 124279 | 0.66 | 0.990202 |
Target: 5'- aGGCGCGGcugACgaucuccagaaagcgCGGCGaggUGAcgcaacccaggcagAAGAGGCCg -3' miRNA: 3'- -UCGUGCU---UGa--------------GCCGC---ACU--------------UUCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 126436 | 0.66 | 0.989951 |
Target: 5'- cAGCACcAGCgacacCGGCGaGAucuuguacagcauGGAGGCCa -3' miRNA: 3'- -UCGUGcUUGa----GCCGCaCUu------------UCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 187894 | 0.66 | 0.989169 |
Target: 5'- cGGCACGGg--CGGCG-GggGcAGGUCg -3' miRNA: 3'- -UCGUGCUugaGCCGCaCuuUcUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 99632 | 0.66 | 0.989169 |
Target: 5'- cGCACGGgcucguaaaagaGCUUggguagcagGGCGgGGAAGGGGCa -3' miRNA: 3'- uCGUGCU------------UGAG---------CCGCaCUUUCUCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 177909 | 0.66 | 0.988761 |
Target: 5'- cGGgGCGAGCgggagGGCGUcgucgggagggaugGGGAGuGGCCg -3' miRNA: 3'- -UCgUGCUUGag---CCGCA--------------CUUUCuCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 130759 | 0.66 | 0.987761 |
Target: 5'- gGGCGCGAGCgccgcgcCGGgGgagcagaaagGGAAGAagacGGCCa -3' miRNA: 3'- -UCGUGCUUGa------GCCgCa---------CUUUCU----CCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 122700 | 0.66 | 0.987761 |
Target: 5'- uGgGCGu-CUCGGCGggGcuGGAGGCg -3' miRNA: 3'- uCgUGCuuGAGCCGCa-CuuUCUCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 96651 | 0.66 | 0.987761 |
Target: 5'- cGCGCGGcaggcggcGC-CGGCGUGcuuGAAGAGcaacGCCu -3' miRNA: 3'- uCGUGCU--------UGaGCCGCAC---UUUCUC----CGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 127822 | 0.66 | 0.987761 |
Target: 5'- aGGCGCGcAGCUCG---UGGAAG-GGCCc -3' miRNA: 3'- -UCGUGC-UUGAGCcgcACUUUCuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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