miRNA display CGI


Results 1 - 20 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 219523 0.66 0.86662
Target:  5'- uUGACgaugaCCGCCACGCgCAGCcagACCg -3'
miRNA:   3'- cGCUGagcg-GGUGGUGCGgGUCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 105020 0.66 0.86662
Target:  5'- cGCGcCUCcCuCCGCCGCuGCUccuccucccgCAGCGCCa -3'
miRNA:   3'- -CGCuGAGcG-GGUGGUG-CGG----------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 23215 0.66 0.86662
Target:  5'- gGCGGCcgagaCGcCCCugCugGUCCGGgGCg -3'
miRNA:   3'- -CGCUGa----GC-GGGugGugCGGGUCgUGg -5'
14631 5' -60.3 NC_003521.1 + 103488 0.66 0.86662
Target:  5'- uGCGGCacgCGCUgGCgAaagggcgaGCCCAGCAgCa -3'
miRNA:   3'- -CGCUGa--GCGGgUGgUg-------CGGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 162773 0.66 0.86662
Target:  5'- --aACUCGCCCaACUACaaGCUCAaCACCa -3'
miRNA:   3'- cgcUGAGCGGG-UGGUG--CGGGUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 128072 0.66 0.86662
Target:  5'- cGCGAUgcCGCCCAugggcUCGCGCUggaAGCGCg -3'
miRNA:   3'- -CGCUGa-GCGGGU-----GGUGCGGg--UCGUGg -5'
14631 5' -60.3 NC_003521.1 + 237751 0.66 0.86662
Target:  5'- --aACUCGgaaCCAUCACGCauuCAGCAUCa -3'
miRNA:   3'- cgcUGAGCg--GGUGGUGCGg--GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 5678 0.66 0.86662
Target:  5'- -aGACacgggCGCCCGuCCGCGgggaaCgGGCGCCg -3'
miRNA:   3'- cgCUGa----GCGGGU-GGUGCg----GgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 89341 0.66 0.86662
Target:  5'- cGCGAUgUCGCacccaagcaCGCaCAUGcCCCAGaCACCg -3'
miRNA:   3'- -CGCUG-AGCGg--------GUG-GUGC-GGGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 84655 0.66 0.86662
Target:  5'- gGCGAgaUGCCgCACagGCGUCgcagCAGCGCCa -3'
miRNA:   3'- -CGCUgaGCGG-GUGg-UGCGG----GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 195799 0.66 0.86662
Target:  5'- -aGGuCUCGCCCugCACGgCCguGGgAUCg -3'
miRNA:   3'- cgCU-GAGCGGGugGUGCgGG--UCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 226376 0.66 0.86662
Target:  5'- gGCGGCUgaCG-CCGCCGCaggGCCguguGCACCa -3'
miRNA:   3'- -CGCUGA--GCgGGUGGUG---CGGgu--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 87481 0.66 0.86662
Target:  5'- aGCGGCg-GCCgAagGUGCCCAGCACa -3'
miRNA:   3'- -CGCUGagCGGgUggUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 102810 0.66 0.86662
Target:  5'- aGCGACgcaCGCgCACCucgACGCCgAGaucgACCu -3'
miRNA:   3'- -CGCUGa--GCGgGUGG---UGCGGgUCg---UGG- -5'
14631 5' -60.3 NC_003521.1 + 210837 0.66 0.86662
Target:  5'- gGCG-CUCGUCC-CCucccucCGUCCAGacCACCg -3'
miRNA:   3'- -CGCuGAGCGGGuGGu-----GCGGGUC--GUGG- -5'
14631 5' -60.3 NC_003521.1 + 164587 0.66 0.86662
Target:  5'- gGCGAgaCaGUaaCCGCCACGCcaCCGGcCGCCg -3'
miRNA:   3'- -CGCUgaG-CG--GGUGGUGCG--GGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 193365 0.66 0.86662
Target:  5'- aCGAguucCUCGaCCaggaguGCgGCGCCCGGCugCa -3'
miRNA:   3'- cGCU----GAGC-GGg-----UGgUGCGGGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 86162 0.66 0.86662
Target:  5'- aGCGuCUCgcuGCCgGCCuCGgCCAGCGgCa -3'
miRNA:   3'- -CGCuGAG---CGGgUGGuGCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 111930 0.66 0.86662
Target:  5'- cCGACgcCGCCCucgacuACCugGCgCGGCGgCa -3'
miRNA:   3'- cGCUGa-GCGGG------UGGugCGgGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 34203 0.66 0.86662
Target:  5'- cGCGACaCGUCCACC-CGaCCguGgguCGCCg -3'
miRNA:   3'- -CGCUGaGCGGGUGGuGC-GGguC---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.