Results 1 - 20 of 720 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14631 | 5' | -60.3 | NC_003521.1 | + | 87481 | 0.66 | 0.86662 |
Target: 5'- aGCGGCg-GCCgAagGUGCCCAGCACa -3' miRNA: 3'- -CGCUGagCGGgUggUGCGGGUCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 128072 | 0.66 | 0.86662 |
Target: 5'- cGCGAUgcCGCCCAugggcUCGCGCUggaAGCGCg -3' miRNA: 3'- -CGCUGa-GCGGGU-----GGUGCGGg--UCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 219523 | 0.66 | 0.86662 |
Target: 5'- uUGACgaugaCCGCCACGCgCAGCcagACCg -3' miRNA: 3'- cGCUGagcg-GGUGGUGCGgGUCG---UGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 210837 | 0.66 | 0.86662 |
Target: 5'- gGCG-CUCGUCC-CCucccucCGUCCAGacCACCg -3' miRNA: 3'- -CGCuGAGCGGGuGGu-----GCGGGUC--GUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 164587 | 0.66 | 0.86662 |
Target: 5'- gGCGAgaCaGUaaCCGCCACGCcaCCGGcCGCCg -3' miRNA: 3'- -CGCUgaG-CG--GGUGGUGCG--GGUC-GUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 111930 | 0.66 | 0.86662 |
Target: 5'- cCGACgcCGCCCucgacuACCugGCgCGGCGgCa -3' miRNA: 3'- cGCUGa-GCGGG------UGGugCGgGUCGUgG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 162773 | 0.66 | 0.86662 |
Target: 5'- --aACUCGCCCaACUACaaGCUCAaCACCa -3' miRNA: 3'- cgcUGAGCGGG-UGGUG--CGGGUcGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 237751 | 0.66 | 0.86662 |
Target: 5'- --aACUCGgaaCCAUCACGCauuCAGCAUCa -3' miRNA: 3'- cgcUGAGCg--GGUGGUGCGg--GUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 98911 | 0.66 | 0.86662 |
Target: 5'- gGCGGCUguagugcgucUGCUCGCgCACgGCCguGCGCa -3' miRNA: 3'- -CGCUGA----------GCGGGUG-GUG-CGGguCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 105020 | 0.66 | 0.86662 |
Target: 5'- cGCGcCUCcCuCCGCCGCuGCUccuccucccgCAGCGCCa -3' miRNA: 3'- -CGCuGAGcG-GGUGGUG-CGG----------GUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 34203 | 0.66 | 0.86662 |
Target: 5'- cGCGACaCGUCCACC-CGaCCguGgguCGCCg -3' miRNA: 3'- -CGCUGaGCGGGUGGuGC-GGguC---GUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 5678 | 0.66 | 0.86662 |
Target: 5'- -aGACacgggCGCCCGuCCGCGgggaaCgGGCGCCg -3' miRNA: 3'- cgCUGa----GCGGGU-GGUGCg----GgUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 84655 | 0.66 | 0.86662 |
Target: 5'- gGCGAgaUGCCgCACagGCGUCgcagCAGCGCCa -3' miRNA: 3'- -CGCUgaGCGG-GUGg-UGCGG----GUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 23215 | 0.66 | 0.86662 |
Target: 5'- gGCGGCcgagaCGcCCCugCugGUCCGGgGCg -3' miRNA: 3'- -CGCUGa----GC-GGGugGugCGGGUCgUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 86162 | 0.66 | 0.86662 |
Target: 5'- aGCGuCUCgcuGCCgGCCuCGgCCAGCGgCa -3' miRNA: 3'- -CGCuGAG---CGGgUGGuGCgGGUCGUgG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 226376 | 0.66 | 0.86662 |
Target: 5'- gGCGGCUgaCG-CCGCCGCaggGCCguguGCACCa -3' miRNA: 3'- -CGCUGA--GCgGGUGGUG---CGGgu--CGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 89341 | 0.66 | 0.86662 |
Target: 5'- cGCGAUgUCGCacccaagcaCGCaCAUGcCCCAGaCACCg -3' miRNA: 3'- -CGCUG-AGCGg--------GUG-GUGC-GGGUC-GUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 195799 | 0.66 | 0.86662 |
Target: 5'- -aGGuCUCGCCCugCACGgCCguGGgAUCg -3' miRNA: 3'- cgCU-GAGCGGGugGUGCgGG--UCgUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 103488 | 0.66 | 0.86662 |
Target: 5'- uGCGGCacgCGCUgGCgAaagggcgaGCCCAGCAgCa -3' miRNA: 3'- -CGCUGa--GCGGgUGgUg-------CGGGUCGUgG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 193365 | 0.66 | 0.86662 |
Target: 5'- aCGAguucCUCGaCCaggaguGCgGCGCCCGGCugCa -3' miRNA: 3'- cGCU----GAGC-GGg-----UGgUGCGGGUCGugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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