miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 194267 0.66 0.7914
Target:  5'- aCCaCCGCUUCagcaCC-CGGcGCGAGGCc -3'
miRNA:   3'- aGGaGGCGGAGca--GGaGCC-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 1067 0.66 0.7914
Target:  5'- cUCgaCCGaCCaUCGg---CGGGCGAGGCc -3'
miRNA:   3'- -AGgaGGC-GG-AGCaggaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 151083 0.66 0.7914
Target:  5'- uUCUggaCCGCCgaccCCUCGGGUcGGGCc -3'
miRNA:   3'- -AGGa--GGCGGagcaGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 196448 0.66 0.7914
Target:  5'- ----aCGCacCUCGgCCUCGGGCGuGGGCc -3'
miRNA:   3'- aggagGCG--GAGCaGGAGCCCGC-UCCG- -5'
14639 5' -62.4 NC_003521.1 + 223755 0.66 0.790562
Target:  5'- aUCCUCCcacuCgUCGUCCUCGcugucGGCGccguuaccgccguGGGCc -3'
miRNA:   3'- -AGGAGGc---GgAGCAGGAGC-----CCGC-------------UCCG- -5'
14639 5' -62.4 NC_003521.1 + 117475 0.66 0.788881
Target:  5'- cUCCUCCacacccggcgacggGCCU-GUCC---GGCGGGGCg -3'
miRNA:   3'- -AGGAGG--------------CGGAgCAGGagcCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 232980 0.66 0.774408
Target:  5'- gCCgUCCGCCacccccUCGUCUUCuGGCGccggauGGCc -3'
miRNA:   3'- aGG-AGGCGG------AGCAGGAGcCCGCu-----CCG- -5'
14639 5' -62.4 NC_003521.1 + 9970 0.66 0.774408
Target:  5'- gUCC-CCGUCUgCccCCUCGGGaaagaacgaGAGGCa -3'
miRNA:   3'- -AGGaGGCGGA-GcaGGAGCCCg--------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 94175 0.66 0.774408
Target:  5'- gUCCUCCucGCCgUCGUCg-UGGcCGGGGCc -3'
miRNA:   3'- -AGGAGG--CGG-AGCAGgaGCCcGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 135924 0.66 0.772685
Target:  5'- gCCUCgGCCacggccgCGggaugugcgacgCCUCGGGCgccugcgacauGAGGCa -3'
miRNA:   3'- aGGAGgCGGa------GCa-----------GGAGCCCG-----------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 83234 0.66 0.770956
Target:  5'- cCCUCgGCgcacuugaccagaUCGUCCUUGGcGUGGGGg -3'
miRNA:   3'- aGGAGgCGg------------AGCAGGAGCC-CGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 152685 0.66 0.765747
Target:  5'- -gCUUCGCUUCGUCUucuucgauUCGGcuuaCGAGGCc -3'
miRNA:   3'- agGAGGCGGAGCAGG--------AGCCc---GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 195065 0.66 0.765747
Target:  5'- cUCCUCUGUCUCGUCagagguuuCUCaGGGUcucGGCc -3'
miRNA:   3'- -AGGAGGCGGAGCAG--------GAG-CCCGcu-CCG- -5'
14639 5' -62.4 NC_003521.1 + 93938 0.66 0.765747
Target:  5'- aCCgcugcCCGCCgUCGucuggcuuccUCCUCuGGGCGggagGGGCg -3'
miRNA:   3'- aGGa----GGCGG-AGC----------AGGAG-CCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 167290 0.66 0.756985
Target:  5'- aCCUCCGucugcgacggauCCUCGucgcccaccacaUCCUcCGGGuCGAGGa -3'
miRNA:   3'- aGGAGGC------------GGAGC------------AGGA-GCCC-GCUCCg -5'
14639 5' -62.4 NC_003521.1 + 73650 0.66 0.756985
Target:  5'- gCCUCCGCCgCGgccgCCUCcaagacgccCGAGGCg -3'
miRNA:   3'- aGGAGGCGGaGCa---GGAGccc------GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 145268 0.66 0.756985
Target:  5'- cUCCUCgGCCUCGgcggCCagcUCGcGCGccGGCg -3'
miRNA:   3'- -AGGAGgCGGAGCa---GG---AGCcCGCu-CCG- -5'
14639 5' -62.4 NC_003521.1 + 40800 0.66 0.756985
Target:  5'- -aCUCCcggcgcggucaGCUauUCG-CCUCgGGGCGGGGCc -3'
miRNA:   3'- agGAGG-----------CGG--AGCaGGAG-CCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 148827 0.66 0.756985
Target:  5'- gCgaCCGCCU-GcCCUCGGcCGAGGUg -3'
miRNA:   3'- aGgaGGCGGAgCaGGAGCCcGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 59326 0.66 0.756985
Target:  5'- cUCCUCCGuacCCUgGUCCUucaccgagcUGGGauGGGCc -3'
miRNA:   3'- -AGGAGGC---GGAgCAGGA---------GCCCgcUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.