Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14639 | 5' | -62.4 | NC_003521.1 | + | 194267 | 0.66 | 0.7914 |
Target: 5'- aCCaCCGCUUCagcaCC-CGGcGCGAGGCc -3' miRNA: 3'- aGGaGGCGGAGca--GGaGCC-CGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 1067 | 0.66 | 0.7914 |
Target: 5'- cUCgaCCGaCCaUCGg---CGGGCGAGGCc -3' miRNA: 3'- -AGgaGGC-GG-AGCaggaGCCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 151083 | 0.66 | 0.7914 |
Target: 5'- uUCUggaCCGCCgaccCCUCGGGUcGGGCc -3' miRNA: 3'- -AGGa--GGCGGagcaGGAGCCCGcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 196448 | 0.66 | 0.7914 |
Target: 5'- ----aCGCacCUCGgCCUCGGGCGuGGGCc -3' miRNA: 3'- aggagGCG--GAGCaGGAGCCCGC-UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 223755 | 0.66 | 0.790562 |
Target: 5'- aUCCUCCcacuCgUCGUCCUCGcugucGGCGccguuaccgccguGGGCc -3' miRNA: 3'- -AGGAGGc---GgAGCAGGAGC-----CCGC-------------UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 117475 | 0.66 | 0.788881 |
Target: 5'- cUCCUCCacacccggcgacggGCCU-GUCC---GGCGGGGCg -3' miRNA: 3'- -AGGAGG--------------CGGAgCAGGagcCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 232980 | 0.66 | 0.774408 |
Target: 5'- gCCgUCCGCCacccccUCGUCUUCuGGCGccggauGGCc -3' miRNA: 3'- aGG-AGGCGG------AGCAGGAGcCCGCu-----CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 9970 | 0.66 | 0.774408 |
Target: 5'- gUCC-CCGUCUgCccCCUCGGGaaagaacgaGAGGCa -3' miRNA: 3'- -AGGaGGCGGA-GcaGGAGCCCg--------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 94175 | 0.66 | 0.774408 |
Target: 5'- gUCCUCCucGCCgUCGUCg-UGGcCGGGGCc -3' miRNA: 3'- -AGGAGG--CGG-AGCAGgaGCCcGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 135924 | 0.66 | 0.772685 |
Target: 5'- gCCUCgGCCacggccgCGggaugugcgacgCCUCGGGCgccugcgacauGAGGCa -3' miRNA: 3'- aGGAGgCGGa------GCa-----------GGAGCCCG-----------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 83234 | 0.66 | 0.770956 |
Target: 5'- cCCUCgGCgcacuugaccagaUCGUCCUUGGcGUGGGGg -3' miRNA: 3'- aGGAGgCGg------------AGCAGGAGCC-CGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 152685 | 0.66 | 0.765747 |
Target: 5'- -gCUUCGCUUCGUCUucuucgauUCGGcuuaCGAGGCc -3' miRNA: 3'- agGAGGCGGAGCAGG--------AGCCc---GCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 195065 | 0.66 | 0.765747 |
Target: 5'- cUCCUCUGUCUCGUCagagguuuCUCaGGGUcucGGCc -3' miRNA: 3'- -AGGAGGCGGAGCAG--------GAG-CCCGcu-CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 93938 | 0.66 | 0.765747 |
Target: 5'- aCCgcugcCCGCCgUCGucuggcuuccUCCUCuGGGCGggagGGGCg -3' miRNA: 3'- aGGa----GGCGG-AGC----------AGGAG-CCCGC----UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 167290 | 0.66 | 0.756985 |
Target: 5'- aCCUCCGucugcgacggauCCUCGucgcccaccacaUCCUcCGGGuCGAGGa -3' miRNA: 3'- aGGAGGC------------GGAGC------------AGGA-GCCC-GCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 73650 | 0.66 | 0.756985 |
Target: 5'- gCCUCCGCCgCGgccgCCUCcaagacgccCGAGGCg -3' miRNA: 3'- aGGAGGCGGaGCa---GGAGccc------GCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 145268 | 0.66 | 0.756985 |
Target: 5'- cUCCUCgGCCUCGgcggCCagcUCGcGCGccGGCg -3' miRNA: 3'- -AGGAGgCGGAGCa---GG---AGCcCGCu-CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 40800 | 0.66 | 0.756985 |
Target: 5'- -aCUCCcggcgcggucaGCUauUCG-CCUCgGGGCGGGGCc -3' miRNA: 3'- agGAGG-----------CGG--AGCaGGAG-CCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 148827 | 0.66 | 0.756985 |
Target: 5'- gCgaCCGCCU-GcCCUCGGcCGAGGUg -3' miRNA: 3'- aGgaGGCGGAgCaGGAGCCcGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 59326 | 0.66 | 0.756985 |
Target: 5'- cUCCUCCGuacCCUgGUCCUucaccgagcUGGGauGGGCc -3' miRNA: 3'- -AGGAGGC---GGAgCAGGA---------GCCCgcUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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