miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 181372 0.66 0.969828
Target:  5'- ---cGGAUCGG-ACAGCCuguaGCGCCAg- -3'
miRNA:   3'- ccaaCCUGGCUaUGUCGG----CGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 49119 0.66 0.969828
Target:  5'- uGGU--GACCGcgGC-GCCGCuGCUGCGg -3'
miRNA:   3'- -CCAacCUGGCuaUGuCGGCG-CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 79586 0.66 0.969828
Target:  5'- --cUGG-CCGcUACuGCCGCuGCCGCc -3'
miRNA:   3'- ccaACCuGGCuAUGuCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 113574 0.66 0.969828
Target:  5'- ---aGGACgCGGUGgGGCUGgGCCuCGg -3'
miRNA:   3'- ccaaCCUG-GCUAUgUCGGCgCGGuGC- -5'
14642 3' -56.2 NC_003521.1 + 172078 0.66 0.969828
Target:  5'- ---aGGACCGucaGCGGCgGCGUgAUGa -3'
miRNA:   3'- ccaaCCUGGCua-UGUCGgCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 167667 0.66 0.969828
Target:  5'- aGGUcgcaGGCCGAgGCGgcGCCGCcGCCGCu -3'
miRNA:   3'- -CCAac--CUGGCUaUGU--CGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 69586 0.66 0.969828
Target:  5'- --cUGGAUUGcgACAGaCGCGCC-CGg -3'
miRNA:   3'- ccaACCUGGCuaUGUCgGCGCGGuGC- -5'
14642 3' -56.2 NC_003521.1 + 184358 0.66 0.969828
Target:  5'- cGGgcGGGCCGuggcGCGGCgccucucggaccUGgGCCACGa -3'
miRNA:   3'- -CCaaCCUGGCua--UGUCG------------GCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 147390 0.66 0.969828
Target:  5'- cGggGGugCGAgaugGCGGaUCGCGUgGCGg -3'
miRNA:   3'- cCaaCCugGCUa---UGUC-GGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 95218 0.66 0.969828
Target:  5'- ---gGGugCGAcUGCAGCaGCgagGCCACGg -3'
miRNA:   3'- ccaaCCugGCU-AUGUCGgCG---CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 213711 0.66 0.969828
Target:  5'- --gUGGGCCucgggGAUGCccAGCCagacgGCGCCGCa -3'
miRNA:   3'- ccaACCUGG-----CUAUG--UCGG-----CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 45285 0.66 0.969828
Target:  5'- --aUGGACCGGgcGCcGCUGgGCCAgGa -3'
miRNA:   3'- ccaACCUGGCUa-UGuCGGCgCGGUgC- -5'
14642 3' -56.2 NC_003521.1 + 54156 0.66 0.969545
Target:  5'- cGUUGGAgaggccgccgccuCCGccACcGCCGCGCgACGu -3'
miRNA:   3'- cCAACCU-------------GGCuaUGuCGGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 138047 0.66 0.966912
Target:  5'- ---cGGcGCCGucaucgcGCAGCCGCuGCCGCu -3'
miRNA:   3'- ccaaCC-UGGCua-----UGUCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 12694 0.66 0.966912
Target:  5'- cGGUUcuacuccaGGACCGA--CGGCUGCuaCGCGc -3'
miRNA:   3'- -CCAA--------CCUGGCUauGUCGGCGcgGUGC- -5'
14642 3' -56.2 NC_003521.1 + 87149 0.66 0.966912
Target:  5'- uGUUGGAgCGGgcGCAGuUCGUGCgCGCGg -3'
miRNA:   3'- cCAACCUgGCUa-UGUC-GGCGCG-GUGC- -5'
14642 3' -56.2 NC_003521.1 + 197653 0.66 0.966912
Target:  5'- cGG-UGGcGCUcGUGCGGCagcaGCGCCACc -3'
miRNA:   3'- -CCaACC-UGGcUAUGUCGg---CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 175062 0.66 0.966912
Target:  5'- ---cGGugUGAUGCGGCC-CGUCAgCGu -3'
miRNA:   3'- ccaaCCugGCUAUGUCGGcGCGGU-GC- -5'
14642 3' -56.2 NC_003521.1 + 207125 0.66 0.966
Target:  5'- -cUUGGGCgGAgucCAGCUGCagcguuacgugcggGCCACGg -3'
miRNA:   3'- ccAACCUGgCUau-GUCGGCG--------------CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 150455 0.66 0.963803
Target:  5'- gGGUccuccUGGuCUGggGCGGCgaGCGCCugGu -3'
miRNA:   3'- -CCA-----ACCuGGCuaUGUCGg-CGCGGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.