miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 195970 0.66 0.693461
Target:  5'- uGGCAGCGGUUGUccuuuccugucaccaGccccaggagcuguGGCGUguCGCcCUCCGg -3'
miRNA:   3'- -CCGUCGCCAGCG---------------U-------------CCGCG--GCG-GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 136693 0.66 0.691613
Target:  5'- aGCagGGCGGgcccgaGCAGGaCGCCGCCgaggauggcagcgcgCCGc -3'
miRNA:   3'- cCG--UCGCCag----CGUCC-GCGGCGGa--------------GGC- -5'
14644 5' -64.3 NC_003521.1 + 221898 0.66 0.690689
Target:  5'- gGGCGGauugcCGG-CGCGcGGCGCCacCCUUCGg -3'
miRNA:   3'- -CCGUC-----GCCaGCGU-CCGCGGc-GGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 57162 0.66 0.690689
Target:  5'- cGCGGCaGGUCGuCGGcGUGCCGCagcaCGa -3'
miRNA:   3'- cCGUCG-CCAGC-GUC-CGCGGCGgag-GC- -5'
14644 5' -64.3 NC_003521.1 + 98960 0.66 0.690689
Target:  5'- uGGUGGCGGcuaGCGacGGCGgCGCCUUUa -3'
miRNA:   3'- -CCGUCGCCag-CGU--CCGCgGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 52687 0.66 0.690689
Target:  5'- cGGCAGC-GUCgGC-GGUGCCaGCCgcUCCa -3'
miRNA:   3'- -CCGUCGcCAG-CGuCCGCGG-CGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 167597 0.66 0.690689
Target:  5'- uGGagAGCGGcgCGCagAGGCGCCGCaggcgCUCgGg -3'
miRNA:   3'- -CCg-UCGCCa-GCG--UCCGCGGCG-----GAGgC- -5'
14644 5' -64.3 NC_003521.1 + 35477 0.66 0.690689
Target:  5'- uGCA-CGG-CGCAGcUGCCGCCgCCGa -3'
miRNA:   3'- cCGUcGCCaGCGUCcGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 212647 0.66 0.689764
Target:  5'- uGGCcauGCGacccgaagagggcGUCGCGGGCauggucGCCGCCgucgCCa -3'
miRNA:   3'- -CCGu--CGC-------------CAGCGUCCG------CGGCGGa---GGc -5'
14644 5' -64.3 NC_003521.1 + 103544 0.66 0.689764
Target:  5'- cGCAGCuccaGGUCGCugGGGCccccgcucugcccGCUGCCgCCGu -3'
miRNA:   3'- cCGUCG----CCAGCG--UCCG-------------CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 56701 0.66 0.687913
Target:  5'- aGGCAGCGGaugaCGCuGGUcgcgucgacgucgaGCCGCgUCaCGu -3'
miRNA:   3'- -CCGUCGCCa---GCGuCCG--------------CGGCGgAG-GC- -5'
14644 5' -64.3 NC_003521.1 + 171614 0.66 0.681424
Target:  5'- aGCGGCGG-CGgGaGUGCCGCCgacgUCGg -3'
miRNA:   3'- cCGUCGCCaGCgUcCGCGGCGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 39231 0.66 0.681424
Target:  5'- gGGaCAGCGGUgGCccgcGGCGCguucaGCCccagCCGg -3'
miRNA:   3'- -CC-GUCGCCAgCGu---CCGCGg----CGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 38477 0.66 0.681424
Target:  5'- uGGCGGUGGgCGCcGGCGUUcuuacucgaGCC-CCGa -3'
miRNA:   3'- -CCGUCGCCaGCGuCCGCGG---------CGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 119084 0.66 0.681424
Target:  5'- gGGCaAGCaGGUgugGCAGGCGC-GCCUgaCCGu -3'
miRNA:   3'- -CCG-UCG-CCAg--CGUCCGCGgCGGA--GGC- -5'
14644 5' -64.3 NC_003521.1 + 239459 0.66 0.681424
Target:  5'- gGGaCAGCGGUgGCccgcGGCGCguucaGCCccagCCGg -3'
miRNA:   3'- -CC-GUCGCCAgCGu---CCGCGg----CGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 46573 0.66 0.681424
Target:  5'- aGCGGUGGUUGCGGuaGCC-CUUCUu -3'
miRNA:   3'- cCGUCGCCAGCGUCcgCGGcGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 118921 0.66 0.681424
Target:  5'- cGGCGccGCGG-CGUGGGCGgCgGCgUCCc -3'
miRNA:   3'- -CCGU--CGCCaGCGUCCGC-GgCGgAGGc -5'
14644 5' -64.3 NC_003521.1 + 88068 0.66 0.681424
Target:  5'- cGCGGUGGUCgGC-GGCGCcCGUgaCCa -3'
miRNA:   3'- cCGUCGCCAG-CGuCCGCG-GCGgaGGc -5'
14644 5' -64.3 NC_003521.1 + 184783 0.66 0.681424
Target:  5'- gGGCAacGCgcgccuGGaCGCccuGGUgGCCGCCUCCGa -3'
miRNA:   3'- -CCGU--CG------CCaGCGu--CCG-CGGCGGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.