miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15665 3' -57 NC_004065.1 + 72089 0.66 0.940666
Target:  5'- cCugCCGcucUCCACCAGCagcucgcguauguCGUACCUc- -3'
miRNA:   3'- -GugGGC---AGGUGGUCGgu-----------GCAUGGAag -5'
15665 3' -57 NC_004065.1 + 207971 0.66 0.938843
Target:  5'- uGCUCGggagCCGCCAGCuuCAUG-AUCUUCa -3'
miRNA:   3'- gUGGGCa---GGUGGUCG--GUGCaUGGAAG- -5'
15665 3' -57 NC_004065.1 + 222647 0.66 0.934128
Target:  5'- gACCCGUCCACguGgCGCGcaguucaACCggaUCg -3'
miRNA:   3'- gUGGGCAGGUGguCgGUGCa------UGGa--AG- -5'
15665 3' -57 NC_004065.1 + 100288 0.66 0.934128
Target:  5'- uGCUCGcCCACCucgcacgaGGCCGCGaUGUCUUCg -3'
miRNA:   3'- gUGGGCaGGUGG--------UCGGUGC-AUGGAAG- -5'
15665 3' -57 NC_004065.1 + 128164 0.66 0.929191
Target:  5'- uCGCCgGgCCGCCAGCCGCuGUuuCCg-- -3'
miRNA:   3'- -GUGGgCaGGUGGUCGGUG-CAu-GGaag -5'
15665 3' -57 NC_004065.1 + 33250 0.66 0.928685
Target:  5'- gACCuCGU-CACCGGCCugGUccgcgagGCCUccgUCa -3'
miRNA:   3'- gUGG-GCAgGUGGUCGGugCA-------UGGA---AG- -5'
15665 3' -57 NC_004065.1 + 109913 0.66 0.924029
Target:  5'- gGCUCGUCCGCCGcggccgccGUCGCGUcCCg-- -3'
miRNA:   3'- gUGGGCAGGUGGU--------CGGUGCAuGGaag -5'
15665 3' -57 NC_004065.1 + 100031 0.66 0.924029
Target:  5'- uCGCCuCGUCCGCCGcccCCGCG-GCgUUCu -3'
miRNA:   3'- -GUGG-GCAGGUGGUc--GGUGCaUGgAAG- -5'
15665 3' -57 NC_004065.1 + 76067 0.66 0.924029
Target:  5'- uCAUCUGUCguCguGCCAgGUGCCUc- -3'
miRNA:   3'- -GUGGGCAGguGguCGGUgCAUGGAag -5'
15665 3' -57 NC_004065.1 + 109579 0.66 0.918643
Target:  5'- cCGCCUGUCUcCUGGCgGCGUAUCa-- -3'
miRNA:   3'- -GUGGGCAGGuGGUCGgUGCAUGGaag -5'
15665 3' -57 NC_004065.1 + 138805 0.66 0.918643
Target:  5'- uCGCCgucaGUCCGCC-GCCGCucGUGCCg-- -3'
miRNA:   3'- -GUGGg---CAGGUGGuCGGUG--CAUGGaag -5'
15665 3' -57 NC_004065.1 + 78816 0.66 0.918092
Target:  5'- -uCCCGUUcgacuucaagucgCACCGGCgcaCACGUGCCUg- -3'
miRNA:   3'- guGGGCAG-------------GUGGUCG---GUGCAUGGAag -5'
15665 3' -57 NC_004065.1 + 48804 0.67 0.913033
Target:  5'- -uCCCGUCCACgCAGCCG---GCCg-- -3'
miRNA:   3'- guGGGCAGGUG-GUCGGUgcaUGGaag -5'
15665 3' -57 NC_004065.1 + 138546 0.67 0.913033
Target:  5'- gGCCgCGUCCA-CGGCCucccUGUACCUg- -3'
miRNA:   3'- gUGG-GCAGGUgGUCGGu---GCAUGGAag -5'
15665 3' -57 NC_004065.1 + 49059 0.67 0.907202
Target:  5'- -cCCCGUCCgGCCAGCUgaccggcaaggAgGUACCggCg -3'
miRNA:   3'- guGGGCAGG-UGGUCGG-----------UgCAUGGaaG- -5'
15665 3' -57 NC_004065.1 + 131507 0.67 0.907202
Target:  5'- gCGCagaaCGUCCGCC-GCCACGgagacgACCa-- -3'
miRNA:   3'- -GUGg---GCAGGUGGuCGGUGCa-----UGGaag -5'
15665 3' -57 NC_004065.1 + 28739 0.67 0.90115
Target:  5'- -cCCCGgCCGCCggagGGCCaaaguacuccaaGCGUACCUUUc -3'
miRNA:   3'- guGGGCaGGUGG----UCGG------------UGCAUGGAAG- -5'
15665 3' -57 NC_004065.1 + 96566 0.67 0.90115
Target:  5'- gACUCGUCCGCCgacgAGCCGCG-ACg--- -3'
miRNA:   3'- gUGGGCAGGUGG----UCGGUGCaUGgaag -5'
15665 3' -57 NC_004065.1 + 36509 0.67 0.89488
Target:  5'- aACaUCGUa-GCCAGCCGCGacacgACCUUCa -3'
miRNA:   3'- gUG-GGCAggUGGUCGGUGCa----UGGAAG- -5'
15665 3' -57 NC_004065.1 + 150574 0.67 0.89488
Target:  5'- gUACCUGUCguCC-GCCGCGUACgUg- -3'
miRNA:   3'- -GUGGGCAGguGGuCGGUGCAUGgAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.