miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 50280 0.66 0.842611
Target:  5'- uCGGGcCCCGAgaccgccguccGCGCGGcGAUCGcGAgGCa -3'
miRNA:   3'- -GUCC-GGGCU-----------CGCGCU-CUGGCuCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 66612 0.66 0.842611
Target:  5'- aCAGGauCCgGAGcCGCG-GGCUGcGGCGCu -3'
miRNA:   3'- -GUCC--GGgCUC-GCGCuCUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 41685 0.66 0.842611
Target:  5'- uGGGgCUGAGCaucGCGAGggacGCgGAGACGg -3'
miRNA:   3'- gUCCgGGCUCG---CGCUC----UGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 120682 0.66 0.842611
Target:  5'- aGGGCCCGGaCGaggucgGAGAgCGAGAagaaCGCg -3'
miRNA:   3'- gUCCGGGCUcGCg-----CUCUgGCUCU----GCG- -5'
15673 3' -60.7 NC_004065.1 + 126061 0.66 0.842611
Target:  5'- aCAGGaucCCCcAGCGCaucucgcacGCCGAGGCGCu -3'
miRNA:   3'- -GUCC---GGGcUCGCGcuc------UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135647 0.66 0.842611
Target:  5'- aCGGGgUCGGGCGCG--GCCGGcGCGUc -3'
miRNA:   3'- -GUCCgGGCUCGCGCucUGGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 127233 0.66 0.842611
Target:  5'- gAGGaUCGGGCGCGGuGGCgGGGAUGa -3'
miRNA:   3'- gUCCgGGCUCGCGCU-CUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 228998 0.66 0.842611
Target:  5'- -cGGCgaggGAGCGCGcGGAgCGAGAuCGCg -3'
miRNA:   3'- guCCGgg--CUCGCGC-UCUgGCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 207796 0.66 0.841852
Target:  5'- uCAGGCgCGAcgacgcggagcGCGCGgcgaggaGGACCGAcGACcGCu -3'
miRNA:   3'- -GUCCGgGCU-----------CGCGC-------UCUGGCU-CUG-CG- -5'
15673 3' -60.7 NC_004065.1 + 72099 0.66 0.84033
Target:  5'- -cGGCCUGAuCGCcAGACUGgacaggaggacgguGGACGCg -3'
miRNA:   3'- guCCGGGCUcGCGcUCUGGC--------------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 110155 0.66 0.834952
Target:  5'- -cGGCggaCGAGC-CGGGACCccccGACGCg -3'
miRNA:   3'- guCCGg--GCUCGcGCUCUGGcu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 185510 0.66 0.834952
Target:  5'- cCGGGCCaGGGuCGUccGAGGCCuGGGcCGCa -3'
miRNA:   3'- -GUCCGGgCUC-GCG--CUCUGG-CUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 68911 0.66 0.834952
Target:  5'- gAGGUgacgCCGAGCGCGgAGAUCaAGaaguuGCGCg -3'
miRNA:   3'- gUCCG----GGCUCGCGC-UCUGGcUC-----UGCG- -5'
15673 3' -60.7 NC_004065.1 + 117400 0.66 0.834952
Target:  5'- -cGGCCgCGcGCGCuGGGCuCGcGGCGCg -3'
miRNA:   3'- guCCGG-GCuCGCGcUCUG-GCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 225597 0.66 0.834952
Target:  5'- gAGGCCCGAGggucaGCGucAGGCCcgccGugGCc -3'
miRNA:   3'- gUCCGGGCUCg----CGC--UCUGGcu--CugCG- -5'
15673 3' -60.7 NC_004065.1 + 194721 0.66 0.830278
Target:  5'- gAGGCgUGAGCGgcggcgccgcCGugcccaaccgcuucGACCGAGGCGCc -3'
miRNA:   3'- gUCCGgGCUCGC----------GCu-------------CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 98800 0.66 0.830278
Target:  5'- uUAGGCCgGgugccAGCGUG-GGCCGGacggauuuauuccuuGACGCa -3'
miRNA:   3'- -GUCCGGgC-----UCGCGCuCUGGCU---------------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 20441 0.66 0.82713
Target:  5'- -cGGUUCGAGCGauuuugguAGuCCGAGACGUc -3'
miRNA:   3'- guCCGGGCUCGCgc------UCuGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 126243 0.66 0.82713
Target:  5'- uCAcGCCCGuGCgGCG-GAUCGAGcCGCc -3'
miRNA:   3'- -GUcCGGGCuCG-CGCuCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 223901 0.66 0.819154
Target:  5'- --aGUCCGcuCGCGaAGGCCGAGACcaGCg -3'
miRNA:   3'- gucCGGGCucGCGC-UCUGGCUCUG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.