miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 47590 0.66 0.898312
Target:  5'- cUCAUGUUGgccauccguugccccCCGCCGCggAUCggCCUCa -3'
miRNA:   3'- -AGUACGAC---------------GGCGGCGagUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 81161 0.66 0.895781
Target:  5'- ---cGCcccCCGCCGC-CGCC-UCCUCg -3'
miRNA:   3'- aguaCGac-GGCGGCGaGUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 34198 0.66 0.895781
Target:  5'- aCggGCUcGagCGCCGuCUCACCGUCC-Ca -3'
miRNA:   3'- aGuaCGA-Cg-GCGGC-GAGUGGUAGGaG- -5'
15676 5' -58.1 NC_004065.1 + 132216 0.66 0.895781
Target:  5'- aCAUGCUGCUGUCGaucuugCGCCugcacccguUCCUg -3'
miRNA:   3'- aGUACGACGGCGGCga----GUGGu--------AGGAg -5'
15676 5' -58.1 NC_004065.1 + 30297 0.66 0.891921
Target:  5'- ---cGCUGCCGCUGUccucguucgugcccgUCACCA-CCg- -3'
miRNA:   3'- aguaCGACGGCGGCG---------------AGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 6131 0.66 0.889303
Target:  5'- ------cGCCGCCGC-CGCCAgcUCCUa -3'
miRNA:   3'- aguacgaCGGCGGCGaGUGGU--AGGAg -5'
15676 5' -58.1 NC_004065.1 + 40195 0.66 0.889303
Target:  5'- cUCAgaGCc-CUGCCGUUCACCAUCUUg -3'
miRNA:   3'- -AGUa-CGacGGCGGCGAGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 71717 0.66 0.889303
Target:  5'- gUCGaacgGCUcCUGCCcugGCUUAUCGUCCUCg -3'
miRNA:   3'- -AGUa---CGAcGGCGG---CGAGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 79287 0.66 0.889303
Target:  5'- aCA-GCUGCgGCUGgUUagcgGCCAUCUUCa -3'
miRNA:   3'- aGUaCGACGgCGGCgAG----UGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 211099 0.66 0.889303
Target:  5'- --cUGCUGcCCGCCGuCUCGCC-UCg-- -3'
miRNA:   3'- aguACGAC-GGCGGC-GAGUGGuAGgag -5'
15676 5' -58.1 NC_004065.1 + 166845 0.66 0.889303
Target:  5'- cUCccGUUGuaGCaGCUCGCCAgggCCUCg -3'
miRNA:   3'- -AGuaCGACggCGgCGAGUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 135306 0.66 0.889303
Target:  5'- ---cGCgGCUGCCGCguaCGCCugaCCUCu -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGua-GGAG- -5'
15676 5' -58.1 NC_004065.1 + 102236 0.66 0.882612
Target:  5'- gUCAUGCaGgCGCuCGacaUCGUCAUCCUCa -3'
miRNA:   3'- -AGUACGaCgGCG-GCg--AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 68825 0.66 0.882612
Target:  5'- ---cGCcGCCGCCGCguugcUCGCCAggcccagCUUCg -3'
miRNA:   3'- aguaCGaCGGCGGCG-----AGUGGUa------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 192701 0.66 0.87571
Target:  5'- aUCGUuaUGCUGCCGUgUACCAUCa-- -3'
miRNA:   3'- -AGUAcgACGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 118237 0.66 0.87571
Target:  5'- uUCAuUGUUaCUGCCGUcuucgucgucaUCAUCAUCCUCg -3'
miRNA:   3'- -AGU-ACGAcGGCGGCG-----------AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 207969 0.66 0.87571
Target:  5'- -aGUGCUcgggaGCCGCCaGCuUCAUgAUCUUCa -3'
miRNA:   3'- agUACGA-----CGGCGG-CG-AGUGgUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 191564 0.66 0.87571
Target:  5'- gUCAcGC-GCgGCCGg-CACCAUCCUg -3'
miRNA:   3'- -AGUaCGaCGgCGGCgaGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 118419 0.66 0.87571
Target:  5'- cCGUGacgGCCGCCGC-CGCgGUCUc- -3'
miRNA:   3'- aGUACga-CGGCGGCGaGUGgUAGGag -5'
15676 5' -58.1 NC_004065.1 + 144513 0.66 0.87571
Target:  5'- -gGUGCUGCUaCUGCUCugCGUggcguUCUCg -3'
miRNA:   3'- agUACGACGGcGGCGAGugGUA-----GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.