miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 26360 0.66 0.847392
Target:  5'- gGCGCUGGCGacggcggcggggauaCGGGGcguuccccaUGCCCcCGCCu- -3'
miRNA:   3'- -CGCGACCGC---------------GCUCU---------AUGGGcGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 98670 0.66 0.844405
Target:  5'- uUGCUGaCGgGGGGgacGCCCGCGCgGa -3'
miRNA:   3'- cGCGACcGCgCUCUa--UGGGCGCGgCc -5'
15677 5' -60.8 NC_004065.1 + 127460 0.66 0.844405
Target:  5'- aCGCugaUGGcCGCGGGAcccgACCCcgGCGCCa- -3'
miRNA:   3'- cGCG---ACC-GCGCUCUa---UGGG--CGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 103784 0.66 0.843654
Target:  5'- aGCaGCUGGUgaucuccGCGAGcg--CCGCGCCGu -3'
miRNA:   3'- -CG-CGACCG-------CGCUCuaugGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 138020 0.66 0.836821
Target:  5'- uCGCUuGCGacaGaAGAUACCCaCGUCGGg -3'
miRNA:   3'- cGCGAcCGCg--C-UCUAUGGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 128463 0.66 0.836821
Target:  5'- cCGCgGGCGCGAucaGGcUACCacugccaGCGCCGc -3'
miRNA:   3'- cGCGaCCGCGCU---CU-AUGGg------CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 38035 0.66 0.836821
Target:  5'- -gGCUGGCGCuGAG-UGCCa--GUCGGu -3'
miRNA:   3'- cgCGACCGCG-CUCuAUGGgcgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 224537 0.66 0.829076
Target:  5'- cGUGCUGcGgGCGAGAcguggaugucGCCCGUGuaGGc -3'
miRNA:   3'- -CGCGAC-CgCGCUCUa---------UGGGCGCggCC- -5'
15677 5' -60.8 NC_004065.1 + 66554 0.66 0.829076
Target:  5'- cGCGCgGcGUGCGAGucguuCUCGuCGCUGGc -3'
miRNA:   3'- -CGCGaC-CGCGCUCuau--GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 143202 0.66 0.829076
Target:  5'- cGCGCgaGGUGgGcAGcugGCCCugGUGCCGGa -3'
miRNA:   3'- -CGCGa-CCGCgC-UCua-UGGG--CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 229409 0.66 0.829076
Target:  5'- cUGCcGG-GCGAGGgcGCCC-CGCCGGc -3'
miRNA:   3'- cGCGaCCgCGCUCUa-UGGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 40243 0.66 0.829076
Target:  5'- aGCGUUGGCgGCGGuGUACagacaccgucaaCgGCGUCGGg -3'
miRNA:   3'- -CGCGACCG-CGCUcUAUG------------GgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 30888 0.66 0.828293
Target:  5'- aGCGCccgcagGGCGuCGGGGUcgcACUCGUguccgucgacaucGCCGGg -3'
miRNA:   3'- -CGCGa-----CCGC-GCUCUA---UGGGCG-------------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 127741 0.66 0.826722
Target:  5'- cGCGCcuuguccucgucggUGGCGcCGGGGUcggguCCCGCgGCCa- -3'
miRNA:   3'- -CGCG--------------ACCGC-GCUCUAu----GGGCG-CGGcc -5'
15677 5' -60.8 NC_004065.1 + 18877 0.66 0.821176
Target:  5'- gGCGgaGGCGgGGGAaACgUGgGCCuGGg -3'
miRNA:   3'- -CGCgaCCGCgCUCUaUGgGCgCGG-CC- -5'
15677 5' -60.8 NC_004065.1 + 188832 0.66 0.821176
Target:  5'- gGUGCUGGcCGUgGAGAgcguCCUGCucuCCGGg -3'
miRNA:   3'- -CGCGACC-GCG-CUCUau--GGGCGc--GGCC- -5'
15677 5' -60.8 NC_004065.1 + 17800 0.66 0.821176
Target:  5'- cGCGuUUGGCGCGAu---CCCGCGUg-- -3'
miRNA:   3'- -CGC-GACCGCGCUcuauGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 35470 0.66 0.821176
Target:  5'- cGCGCU-GCGCGG--UGCCCGUGacgacguucaCGGg -3'
miRNA:   3'- -CGCGAcCGCGCUcuAUGGGCGCg---------GCC- -5'
15677 5' -60.8 NC_004065.1 + 193516 0.66 0.821176
Target:  5'- --cCUGGCG-GAGAaaUGuaauuugucUCCGCGCCGGg -3'
miRNA:   3'- cgcGACCGCgCUCU--AU---------GGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 68262 0.66 0.821176
Target:  5'- gGCuGCUGGCGuCGaAGAUcCUgGCGCUGu -3'
miRNA:   3'- -CG-CGACCGC-GC-UCUAuGGgCGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.