miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 3' -52.8 NC_004084.1 + 52931 0.66 0.893752
Target:  5'- gUCGAcUGCga-CGAUcugGCCGuCGGCGUCg -3'
miRNA:   3'- -AGCU-ACGacaGCUA---UGGCuGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 21982 0.66 0.893752
Target:  5'- aCGGUGCaGaCGGcgUACguCGACGACGCg -3'
miRNA:   3'- aGCUACGaCaGCU--AUG--GCUGCUGCGg -5'
16407 3' -52.8 NC_004084.1 + 12208 0.66 0.893752
Target:  5'- aUGAUGaucGUCGAcgcauCCGACGAcgaucuCGCCg -3'
miRNA:   3'- aGCUACga-CAGCUau---GGCUGCU------GCGG- -5'
16407 3' -52.8 NC_004084.1 + 21944 0.66 0.893752
Target:  5'- gUUGAagUGCggGUCGAgaucucCCgGACGACGCg -3'
miRNA:   3'- -AGCU--ACGa-CAGCUau----GG-CUGCUGCGg -5'
16407 3' -52.8 NC_004084.1 + 22561 0.66 0.893752
Target:  5'- uUCGAUGUUcgacUCGGcguucgGCCGAuCGGCGUCu -3'
miRNA:   3'- -AGCUACGAc---AGCUa-----UGGCU-GCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 24777 0.66 0.893039
Target:  5'- aUCGAcacUGCUGUCGAugauccccucucgUACCG-CGAUuaCc -3'
miRNA:   3'- -AGCU---ACGACAGCU-------------AUGGCuGCUGcgG- -5'
16407 3' -52.8 NC_004084.1 + 15571 0.66 0.891607
Target:  5'- gUCGAUGCgcuagcggcaucaaUGUCaGAUGCCacguuccCGACGCa -3'
miRNA:   3'- -AGCUACG--------------ACAG-CUAUGGcu-----GCUGCGg -5'
16407 3' -52.8 NC_004084.1 + 27195 0.66 0.886512
Target:  5'- gCGAcGCUGaaugcguaccUCGAgguuCgCGACGACGUCg -3'
miRNA:   3'- aGCUaCGAC----------AGCUau--G-GCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 40935 0.66 0.886512
Target:  5'- aCGAUGUcuUCGAUGgUGACuGugGUCa -3'
miRNA:   3'- aGCUACGacAGCUAUgGCUG-CugCGG- -5'
16407 3' -52.8 NC_004084.1 + 29318 0.66 0.886512
Target:  5'- aCGAugUGCUGgauGAgcaucUACCgcggcGACGACGCCc -3'
miRNA:   3'- aGCU--ACGACag-CU-----AUGG-----CUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 13452 0.66 0.886512
Target:  5'- gUGAUGCgGUCcacuCgCGACGaACGCCg -3'
miRNA:   3'- aGCUACGaCAGcuauG-GCUGC-UGCGG- -5'
16407 3' -52.8 NC_004084.1 + 36528 0.66 0.886512
Target:  5'- cCGcgGcCUGUugaaguuccucgCGAUGCgGAUGACGCa -3'
miRNA:   3'- aGCuaC-GACA------------GCUAUGgCUGCUGCGg -5'
16407 3' -52.8 NC_004084.1 + 12933 0.66 0.886512
Target:  5'- aCGAUGaCgacGUCuucgugACCGACGAuaCGCCa -3'
miRNA:   3'- aGCUAC-Ga--CAGcua---UGGCUGCU--GCGG- -5'
16407 3' -52.8 NC_004084.1 + 12937 0.66 0.879013
Target:  5'- -aGAcGCUGaUCGAcGCCGAaCGAgGCUc -3'
miRNA:   3'- agCUaCGAC-AGCUaUGGCU-GCUgCGG- -5'
16407 3' -52.8 NC_004084.1 + 8236 0.66 0.879013
Target:  5'- -aGAggGCgacGUCGAga-CGAuCGACGCCg -3'
miRNA:   3'- agCUa-CGa--CAGCUaugGCU-GCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 46691 0.66 0.871262
Target:  5'- uUCGA-GCacGUC---GCCGGCGACGUCu -3'
miRNA:   3'- -AGCUaCGa-CAGcuaUGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 22408 0.66 0.871262
Target:  5'- aCGAUcacGCUucUCGGcuCCGACGACGCg -3'
miRNA:   3'- aGCUA---CGAc-AGCUauGGCUGCUGCGg -5'
16407 3' -52.8 NC_004084.1 + 8598 0.66 0.871262
Target:  5'- uUCGAUGaacucGUCGAgGCUGuccuCGAgGCCg -3'
miRNA:   3'- -AGCUACga---CAGCUaUGGCu---GCUgCGG- -5'
16407 3' -52.8 NC_004084.1 + 36415 0.66 0.871262
Target:  5'- gUCGAUGUUcguccgcgcGUCG---UCGACGuACGCCg -3'
miRNA:   3'- -AGCUACGA---------CAGCuauGGCUGC-UGCGG- -5'
16407 3' -52.8 NC_004084.1 + 58079 0.66 0.871262
Target:  5'- aCGgcGUUGUCGuUGCCGuccUGGuCGCCg -3'
miRNA:   3'- aGCuaCGACAGCuAUGGCu--GCU-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.