miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16593 5' -42.4 NC_004117.1 + 29550 0.66 1
Target:  5'- uUCGCACGccuacggcaaauuuGUGAggcUUUAcgGCGCACg -3'
miRNA:   3'- -AGCGUGU--------------UAUUaa-AAGUaaCGCGUGg -5'
16593 5' -42.4 NC_004117.1 + 130651 0.68 1
Target:  5'- cUGCuuuuuAUAAUAAUg--UAUUGCGCAUCa -3'
miRNA:   3'- aGCG-----UGUUAUUAaaaGUAACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 131984 0.68 1
Target:  5'- -gGCACGAUuGUUUugUCAUUG-GCGCg -3'
miRNA:   3'- agCGUGUUAuUAAA--AGUAACgCGUGg -5'
16593 5' -42.4 NC_004117.1 + 18506 0.67 1
Target:  5'- gUUGCGCAG--------AUUGCGCACUa -3'
miRNA:   3'- -AGCGUGUUauuaaaagUAACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 36500 0.67 1
Target:  5'- -gGCACAAUGGUUgugcaauacUUGUUGgGCGCa -3'
miRNA:   3'- agCGUGUUAUUAAa--------AGUAACgCGUGg -5'
16593 5' -42.4 NC_004117.1 + 826 0.68 1
Target:  5'- uUCGUACAAUAGUUUUUguauaguGUcucuaucguugguggUGUGCugCg -3'
miRNA:   3'- -AGCGUGUUAUUAAAAG-------UA---------------ACGCGugG- -5'
16593 5' -42.4 NC_004117.1 + 17741 0.66 1
Target:  5'- -gGCuaaAGUGGUUUga--UGCGCGCCa -3'
miRNA:   3'- agCGug-UUAUUAAAaguaACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 32007 0.68 1
Target:  5'- aUCGCACAgaagGUGAg--UCGUcggGCGUggccGCCa -3'
miRNA:   3'- -AGCGUGU----UAUUaaaAGUAa--CGCG----UGG- -5'
16593 5' -42.4 NC_004117.1 + 40915 0.67 1
Target:  5'- uUCaCGCGAUAAUaUUCAUUaCGaCACCu -3'
miRNA:   3'- -AGcGUGUUAUUAaAAGUAAcGC-GUGG- -5'
16593 5' -42.4 NC_004117.1 + 135612 0.67 1
Target:  5'- gUGCGCAAUGAaaaUUAUUGUGCGa- -3'
miRNA:   3'- aGCGUGUUAUUaaaAGUAACGCGUgg -5'
16593 5' -42.4 NC_004117.1 + 71377 0.67 1
Target:  5'- uUCGCGCAAaucauagUgAUUGCGCAa- -3'
miRNA:   3'- -AGCGUGUUauuaaa-AgUAACGCGUgg -5'
16593 5' -42.4 NC_004117.1 + 46158 0.67 1
Target:  5'- aCGCGCA--GAg--UgAUUGCGCuACCc -3'
miRNA:   3'- aGCGUGUuaUUaaaAgUAACGCG-UGG- -5'
16593 5' -42.4 NC_004117.1 + 78237 0.66 1
Target:  5'- -aGCucuuCGAUGGUgcauugUUUGUcGCGCGCCa -3'
miRNA:   3'- agCGu---GUUAUUAa-----AAGUAaCGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 92897 0.66 1
Target:  5'- aUCGCGCcaaaAAUAcag-UUGUUGCGCugUg -3'
miRNA:   3'- -AGCGUG----UUAUuaaaAGUAACGCGugG- -5'
16593 5' -42.4 NC_004117.1 + 70527 0.66 1
Target:  5'- -aGUACAGccAAUUUUCGUUGUGaGCUa -3'
miRNA:   3'- agCGUGUUa-UUAAAAGUAACGCgUGG- -5'
16593 5' -42.4 NC_004117.1 + 62644 0.66 1
Target:  5'- cUGUGCAAUAGUUgcuacauuUUCAaUGCGUAUUg -3'
miRNA:   3'- aGCGUGUUAUUAA--------AAGUaACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 143398 0.66 1
Target:  5'- gCGUuucaGCAGUAAU--UUAUUGCGUcCCa -3'
miRNA:   3'- aGCG----UGUUAUUAaaAGUAACGCGuGG- -5'
16593 5' -42.4 NC_004117.1 + 150213 0.66 1
Target:  5'- aCGCAUAAcGGUcaUCAaaaUGgGCACCg -3'
miRNA:   3'- aGCGUGUUaUUAaaAGUa--ACgCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 157505 0.67 1
Target:  5'- aCGUugAAccGUgg-CAUUGCGCAUUa -3'
miRNA:   3'- aGCGugUUauUAaaaGUAACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 157109 0.67 1
Target:  5'- -aGUACAAUA-------UUGCGCGCCc -3'
miRNA:   3'- agCGUGUUAUuaaaaguAACGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.