miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 41617 0.67 0.523664
Target:  5'- cGCGCuCGCUcgugcucugGCGGcagauugucGGGCGCGGgcugcgGCCg -3'
miRNA:   3'- cCGCGuGCGA---------UGCU---------CCCGCGUUa-----CGG- -5'
16993 5' -57.2 NC_004333.2 + 41437 0.69 0.414071
Target:  5'- aGGCGC-UGCUcgACGcGGGCGagucgGCCg -3'
miRNA:   3'- -CCGCGuGCGA--UGCuCCCGCguua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 41426 0.72 0.261887
Target:  5'- aGGCGCGCGac-CG-GGGCGCcGUGgCg -3'
miRNA:   3'- -CCGCGUGCgauGCuCCCGCGuUACgG- -5'
16993 5' -57.2 NC_004333.2 + 40212 0.66 0.587963
Target:  5'- --gGCACGCUguACGAaGuGCGCGAcgcgGCCg -3'
miRNA:   3'- ccgCGUGCGA--UGCUcC-CGCGUUa---CGG- -5'
16993 5' -57.2 NC_004333.2 + 39855 0.75 0.176594
Target:  5'- gGGCGCguaACGCauaGCG-GGGCGCGA-GCCc -3'
miRNA:   3'- -CCGCG---UGCGa--UGCuCCCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 39270 0.66 0.544847
Target:  5'- aGGCGCACGCgcgcGCGAu--CGCAGguugGCUg -3'
miRNA:   3'- -CCGCGUGCGa---UGCUcccGCGUUa---CGG- -5'
16993 5' -57.2 NC_004333.2 + 39231 0.71 0.304437
Target:  5'- cGCGCACGCgauggacaGCGccGGCGCGAacgaaGCCg -3'
miRNA:   3'- cCGCGUGCGa-------UGCucCCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 39186 0.74 0.181413
Target:  5'- uGCGCGCGCUGCaccGGCaGCAcgGCCc -3'
miRNA:   3'- cCGCGUGCGAUGcucCCG-CGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 38933 0.69 0.404814
Target:  5'- -cCGCACGCgGCGAGgcgcccccguucGGCGCGAUGg- -3'
miRNA:   3'- ccGCGUGCGaUGCUC------------CCGCGUUACgg -5'
16993 5' -57.2 NC_004333.2 + 38758 0.7 0.327627
Target:  5'- cGGCGUGCGCagccCGcAGGGCaGCGAagacgacgaaaUGCCg -3'
miRNA:   3'- -CCGCGUGCGau--GC-UCCCG-CGUU-----------ACGG- -5'
16993 5' -57.2 NC_004333.2 + 38599 0.66 0.598854
Target:  5'- aGCGC-CaGCUACagccGGGCGCGccgcugcccgugGUGCCc -3'
miRNA:   3'- cCGCGuG-CGAUGcu--CCCGCGU------------UACGG- -5'
16993 5' -57.2 NC_004333.2 + 38551 0.67 0.513191
Target:  5'- aGGCGCGcCGCcgGCagccGGuGCGCAAccgGCCg -3'
miRNA:   3'- -CCGCGU-GCGa-UGcu--CC-CGCGUUa--CGG- -5'
16993 5' -57.2 NC_004333.2 + 38463 0.66 0.555543
Target:  5'- uGGCGCgACGCgAUGAuuGCGC--UGCCg -3'
miRNA:   3'- -CCGCG-UGCGaUGCUccCGCGuuACGG- -5'
16993 5' -57.2 NC_004333.2 + 38418 0.72 0.268628
Target:  5'- uGGCGCuCGUUgACGAcGGGCGCGcauccggcgcucAUGUCg -3'
miRNA:   3'- -CCGCGuGCGA-UGCU-CCCGCGU------------UACGG- -5'
16993 5' -57.2 NC_004333.2 + 38324 0.7 0.3438
Target:  5'- cGGCGaaauGCGCcuCGAGGGCGU---GCCg -3'
miRNA:   3'- -CCGCg---UGCGauGCUCCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 37781 0.67 0.49251
Target:  5'- aGGCcaaGCAgGCcaaggaUGCGaAGcGGCGCGAUGCg -3'
miRNA:   3'- -CCG---CGUgCG------AUGC-UC-CCGCGUUACGg -5'
16993 5' -57.2 NC_004333.2 + 37179 0.69 0.395688
Target:  5'- cGGCGaCACGCcgcucACGAcGcGCGCcGGUGCCg -3'
miRNA:   3'- -CCGC-GUGCGa----UGCUcC-CGCG-UUACGG- -5'
16993 5' -57.2 NC_004333.2 + 37113 0.66 0.570617
Target:  5'- gGGcCGCACGCccgGCGGucgagaauucgacccGGGCGCGcuugGCg -3'
miRNA:   3'- -CC-GCGUGCGa--UGCU---------------CCCGCGUua--CGg -5'
16993 5' -57.2 NC_004333.2 + 36261 0.72 0.282528
Target:  5'- uGGCGCGCGCgcCGcu-GCGCA-UGCCg -3'
miRNA:   3'- -CCGCGUGCGauGCuccCGCGUuACGG- -5'
16993 5' -57.2 NC_004333.2 + 36175 0.68 0.482314
Target:  5'- aGCGCcUGC-ACGAgcacgagauuGGGCGCAA-GCCc -3'
miRNA:   3'- cCGCGuGCGaUGCU----------CCCGCGUUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.