miRNA display CGI


Results 1 - 20 of 170 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 18564 0.65 0.561472
Target:  5'- gGCGCGGCGgcgaauCCGAacccgUUCGUgcaacaaacgaccgGCGCGGCa -3'
miRNA:   3'- -CGUGCCGU------GGCUg----AAGCG--------------CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 43922 0.66 0.554038
Target:  5'- ---gGGCGCaCGAa--CGUGCGCGGCa -3'
miRNA:   3'- cgugCCGUG-GCUgaaGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 33410 0.66 0.554038
Target:  5'- -uGCGGCGCagCGACUgCGCGC-CGAa- -3'
miRNA:   3'- cgUGCCGUG--GCUGAaGCGCGcGCUga -5'
16994 5' -58.2 NC_004333.2 + 30866 0.66 0.554038
Target:  5'- -gGCGGUucuccuCCGACgucUCGCGCauCGACUg -3'
miRNA:   3'- cgUGCCGu-----GGCUGa--AGCGCGc-GCUGA- -5'
16994 5' -58.2 NC_004333.2 + 47193 0.66 0.554038
Target:  5'- cGCGCaGCACgaGGCacaagUCGC-CGCGACg -3'
miRNA:   3'- -CGUGcCGUGg-CUGa----AGCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 157 0.66 0.554038
Target:  5'- gGCGCGaGCACaCGAUcggCGCcugGCGCGAg- -3'
miRNA:   3'- -CGUGC-CGUG-GCUGaa-GCG---CGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 754 0.66 0.554038
Target:  5'- --uUGGCGCCGGCga-GCG-GCGAUg -3'
miRNA:   3'- cguGCCGUGGCUGaagCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 27734 0.66 0.554038
Target:  5'- --cCGGCGCaGGCUUCGCGcCGCcGAa- -3'
miRNA:   3'- cguGCCGUGgCUGAAGCGC-GCG-CUga -5'
16994 5' -58.2 NC_004333.2 + 31097 0.66 0.554038
Target:  5'- gGCcCGGUucGCCGAUguucCG-GCGCGGCUg -3'
miRNA:   3'- -CGuGCCG--UGGCUGaa--GCgCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 17002 0.66 0.543469
Target:  5'- aGUACGGCgcGCCGuCUggGCG-GCGAUg -3'
miRNA:   3'- -CGUGCCG--UGGCuGAagCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 36262 0.66 0.543469
Target:  5'- gGCGCGcGCGCCG-CUgcgcaugcCGgGCcGCGACg -3'
miRNA:   3'- -CGUGC-CGUGGCuGAa-------GCgCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 7128 0.66 0.543469
Target:  5'- -gGCGGCGCgaaacguguCGACgaUCGUGCGCGcCg -3'
miRNA:   3'- cgUGCCGUG---------GCUGa-AGCGCGCGCuGa -5'
16994 5' -58.2 NC_004333.2 + 8221 0.66 0.543469
Target:  5'- uGCGCGGCaggaugacGCCGGCc---CGCGCGAg- -3'
miRNA:   3'- -CGUGCCG--------UGGCUGaagcGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 32446 0.66 0.543469
Target:  5'- cGUAcuCGGCGCC--CUUCaGCGCcGCGACg -3'
miRNA:   3'- -CGU--GCCGUGGcuGAAG-CGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 47714 0.66 0.543469
Target:  5'- uCACGcuCGCCGGCacgUCGCGCGCcguGGCc -3'
miRNA:   3'- cGUGCc-GUGGCUGa--AGCGCGCG---CUGa -5'
16994 5' -58.2 NC_004333.2 + 42216 0.66 0.543469
Target:  5'- -uGCGGC-UCGACUUCGacCGCaCGACg -3'
miRNA:   3'- cgUGCCGuGGCUGAAGC--GCGcGCUGa -5'
16994 5' -58.2 NC_004333.2 + 36528 0.66 0.542416
Target:  5'- uGCGCgacuacuGGCAgcgcuacuUCGACacgUUCGCGCGCGAa- -3'
miRNA:   3'- -CGUG-------CCGU--------GGCUG---AAGCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 45892 0.66 0.532967
Target:  5'- cCACGGUACaCGACUUgcgacggcaaaCGCGCuGCG-CUc -3'
miRNA:   3'- cGUGCCGUG-GCUGAA-----------GCGCG-CGCuGA- -5'
16994 5' -58.2 NC_004333.2 + 9482 0.66 0.532967
Target:  5'- -gGCGGCugCGGgaaUUUCaGCGCgGCGGCc -3'
miRNA:   3'- cgUGCCGugGCU---GAAG-CGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 38717 0.66 0.532967
Target:  5'- gGUGCGGCACCcGCgccUgGUGCGCagGACg -3'
miRNA:   3'- -CGUGCCGUGGcUGa--AgCGCGCG--CUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.