miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 3923 0.66 0.393432
Target:  5'- cGGCaGCGGCG--GCAGGCcGaCCGGCa- -3'
miRNA:   3'- -CCG-CGCUGCgaCGUUCGaC-GGCCGca -5'
16999 3' -61 NC_004333.2 + 20975 0.66 0.393432
Target:  5'- cGCGCGGCGCggGCGAGUgggUGCguuucgaGcGCGUg -3'
miRNA:   3'- cCGCGCUGCGa-CGUUCG---ACGg------C-CGCA- -5'
16999 3' -61 NC_004333.2 + 36091 0.66 0.391661
Target:  5'- -aCGCGGCGCUGCGcgccAGCcacguacgcaagGuuGGCGa -3'
miRNA:   3'- ccGCGCUGCGACGU----UCGa-----------CggCCGCa -5'
16999 3' -61 NC_004333.2 + 15470 0.66 0.384627
Target:  5'- cGGCGCGcuugGCGUgccgagcGCAacagGGCUGCucgCGGCGg -3'
miRNA:   3'- -CCGCGC----UGCGa------CGU----UCGACG---GCCGCa -5'
16999 3' -61 NC_004333.2 + 19805 0.66 0.384627
Target:  5'- aGUGCGauGCGCUGCugaccgaUGCCGGCc- -3'
miRNA:   3'- cCGCGC--UGCGACGuucg---ACGGCCGca -5'
16999 3' -61 NC_004333.2 + 30915 0.66 0.384627
Target:  5'- cGCGuCGACGCUugccuucaucGCAcgaucacguccGGCgauacGCCGGCGg -3'
miRNA:   3'- cCGC-GCUGCGA----------CGU-----------UCGa----CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 12791 0.66 0.384627
Target:  5'- cGCuCGAUGCguuCAAGCcgGUCGGCGUg -3'
miRNA:   3'- cCGcGCUGCGac-GUUCGa-CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 11210 0.66 0.384627
Target:  5'- cGCGCGcACGUgauucggGCGcGGCuccuUGCCGGCGc -3'
miRNA:   3'- cCGCGC-UGCGa------CGU-UCG----ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 27638 0.66 0.384627
Target:  5'- cGGCGCGGCcauGUUaCAGGCcGCCaGCGa -3'
miRNA:   3'- -CCGCGCUG---CGAcGUUCGaCGGcCGCa -5'
16999 3' -61 NC_004333.2 + 19717 0.66 0.384627
Target:  5'- uGCuCGGCGCUGguGGCgUGCaagaCGGCGc -3'
miRNA:   3'- cCGcGCUGCGACguUCG-ACG----GCCGCa -5'
16999 3' -61 NC_004333.2 + 2987 0.66 0.383754
Target:  5'- uGGCGCGGacaGCUGCc-GCUGCgcaucagcaagcgCGGCc- -3'
miRNA:   3'- -CCGCGCUg--CGACGuuCGACG-------------GCCGca -5'
16999 3' -61 NC_004333.2 + 21633 0.66 0.383754
Target:  5'- cGGCGCGGgcuccgugcaguuCGCcGCAc-CUGUCGGCGc -3'
miRNA:   3'- -CCGCGCU-------------GCGaCGUucGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 415 0.66 0.375953
Target:  5'- aGCGCGGCGaugUGCuuGGCacagucgGCCGGgGUg -3'
miRNA:   3'- cCGCGCUGCg--ACGu-UCGa------CGGCCgCA- -5'
16999 3' -61 NC_004333.2 + 12999 0.66 0.375953
Target:  5'- cGCGCaGGUuaUGCAA-CUGCCGGCGa -3'
miRNA:   3'- cCGCG-CUGcgACGUUcGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 39047 0.66 0.375953
Target:  5'- aGCGCGACG-UGCGuuacguGCUcGgCGGCGa -3'
miRNA:   3'- cCGCGCUGCgACGUu-----CGA-CgGCCGCa -5'
16999 3' -61 NC_004333.2 + 13537 0.66 0.375953
Target:  5'- -uCGCGGCGUUGCc----GCCGGCGg -3'
miRNA:   3'- ccGCGCUGCGACGuucgaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 38615 0.66 0.370813
Target:  5'- gGGCGCGcCGCUGCccguGGUgcccguucugaucgGCCcgGGCGg -3'
miRNA:   3'- -CCGCGCuGCGACGu---UCGa-------------CGG--CCGCa -5'
16999 3' -61 NC_004333.2 + 25817 0.66 0.367412
Target:  5'- cGGCGCG-UGCggcGCAGGUUucGUCGGCu- -3'
miRNA:   3'- -CCGCGCuGCGa--CGUUCGA--CGGCCGca -5'
16999 3' -61 NC_004333.2 + 41529 0.66 0.367412
Target:  5'- aGCGCGcCGa-GCGcGCUGCCGaGCGc -3'
miRNA:   3'- cCGCGCuGCgaCGUuCGACGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 25307 0.66 0.367412
Target:  5'- gGGC-CGACGCcgGCGA-CUGCCGcGaCGUa -3'
miRNA:   3'- -CCGcGCUGCGa-CGUUcGACGGC-C-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.