miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 24643 0.66 0.659331
Target:  5'- cUACGCagauCGGCGgcuacccgaaaGGCGCGGU--GCUGCa -3'
miRNA:   3'- uAUGCG----GCCGU-----------UCGCGCUAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 14713 0.66 0.659331
Target:  5'- aGUGCGCCaagcGGCAGGuCGgGAUuGuAGCCGa -3'
miRNA:   3'- -UAUGCGG----CCGUUC-GCgCUA-C-UUGGCg -5'
16999 5' -55.7 NC_004333.2 + 6306 0.66 0.659331
Target:  5'- -cGCGCUGGUgaaAGGCuGCGcagccGUGAggacgACCGCa -3'
miRNA:   3'- uaUGCGGCCG---UUCG-CGC-----UACU-----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 45713 0.66 0.659331
Target:  5'- -cACGCCuGCAucucgagcccGGCGCGAacgUGccGAUCGCg -3'
miRNA:   3'- uaUGCGGcCGU----------UCGCGCU---AC--UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 36362 0.66 0.659331
Target:  5'- -cGCGCCGuc--GCGCuGAUG-GCCGCg -3'
miRNA:   3'- uaUGCGGCcguuCGCG-CUACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 22768 0.66 0.658219
Target:  5'- --cCGCCGGCAcgcugcaGGCGCGcuc-GCCGg -3'
miRNA:   3'- uauGCGGCCGU-------UCGCGCuacuUGGCg -5'
16999 5' -55.7 NC_004333.2 + 41745 0.66 0.658219
Target:  5'- -gGCGCgGGCGAcucGCGCGccgggcuAUGGGuCUGCa -3'
miRNA:   3'- uaUGCGgCCGUU---CGCGC-------UACUU-GGCG- -5'
16999 5' -55.7 NC_004333.2 + 27886 0.66 0.655994
Target:  5'- aGUACGgCGGCAucacuucggccaucAGCGCGuacGAAgCGUu -3'
miRNA:   3'- -UAUGCgGCCGU--------------UCGCGCua-CUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 45074 0.66 0.648198
Target:  5'- -cGCGCCcgGGCAAGaaaaCGgcGGACUGCg -3'
miRNA:   3'- uaUGCGG--CCGUUCgc--GCuaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 12806 0.66 0.648198
Target:  5'- ---aGCCGGUcGGCGUGAUaccGAGCaGCu -3'
miRNA:   3'- uaugCGGCCGuUCGCGCUA---CUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 2997 0.66 0.648198
Target:  5'- -gACGCUcGCcGGCGCGucc-GCCGCg -3'
miRNA:   3'- uaUGCGGcCGuUCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 8544 0.66 0.648198
Target:  5'- -cGCGaCCGGCAuGCcCGGcUGGAUCGUg -3'
miRNA:   3'- uaUGC-GGCCGUuCGcGCU-ACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 39951 0.66 0.648198
Target:  5'- -cGCGCgGGCcGGCGUcAUccuGCCGCg -3'
miRNA:   3'- uaUGCGgCCGuUCGCGcUAcu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19039 0.66 0.648198
Target:  5'- cUACGCCGauGCGauGGCG-GAUGcuGACCGUc -3'
miRNA:   3'- uAUGCGGC--CGU--UCGCgCUAC--UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 18307 0.66 0.647084
Target:  5'- --uCGCCGGCAcGCGCGugcgcacGAuccucacGCCGUu -3'
miRNA:   3'- uauGCGGCCGUuCGCGCua-----CU-------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 43747 0.66 0.63705
Target:  5'- -cGCGuuGGCGGGUuugauaggagGaCGAaaugcUGGACCGCg -3'
miRNA:   3'- uaUGCggCCGUUCG----------C-GCU-----ACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 44426 0.66 0.63705
Target:  5'- --uCGCUGGCuGGUGCGugcGAGgCGCu -3'
miRNA:   3'- uauGCGGCCGuUCGCGCua-CUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 29720 0.66 0.63705
Target:  5'- --gUGCCGGguuGCGCGAacuuuuUGAACgCGCu -3'
miRNA:   3'- uauGCGGCCguuCGCGCU------ACUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 46120 0.66 0.63705
Target:  5'- gGUGCGCgcuaCGGCAAGUuCGAgGAucacGCCGUg -3'
miRNA:   3'- -UAUGCG----GCCGUUCGcGCUaCU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 33285 0.66 0.63705
Target:  5'- ---aGCCGaGCGcGCGCGuUGcgucGGCCGCa -3'
miRNA:   3'- uaugCGGC-CGUuCGCGCuAC----UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.