miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 3' -56.3 NC_004333.2 + 34091 0.66 0.666336
Target:  5'- cAUGACG-AUCGCGCUgcaucagcuuuGCCUgcgcaccccCAUCGCu -3'
miRNA:   3'- -UGCUGCuUGGCGCGG-----------CGGAa--------GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 33952 0.66 0.666336
Target:  5'- -aGACGGcACCGUGauGCC--CGUCGCg -3'
miRNA:   3'- ugCUGCU-UGGCGCggCGGaaGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 38236 0.66 0.666336
Target:  5'- --aGCGcGCCGCGCCGUUcgUCAaCGUg -3'
miRNA:   3'- ugcUGCuUGGCGCGGCGGa-AGUaGCG- -5'
17024 3' -56.3 NC_004333.2 + 14930 0.66 0.666336
Target:  5'- -gGACGAccGCCGagaG-CGCCUcuucagcauucuUCGUCGCg -3'
miRNA:   3'- ugCUGCU--UGGCg--CgGCGGA------------AGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 766 0.66 0.666336
Target:  5'- aGCGGCGAuguaGCUGCGaUUGCUUgcgCGUCGg -3'
miRNA:   3'- -UGCUGCU----UGGCGC-GGCGGAa--GUAGCg -5'
17024 3' -56.3 NC_004333.2 + 2988 0.66 0.666336
Target:  5'- gGCG-CGGACaGCuGCCGCUgcgCAUCaGCa -3'
miRNA:   3'- -UGCuGCUUGgCG-CGGCGGaa-GUAG-CG- -5'
17024 3' -56.3 NC_004333.2 + 14726 0.66 0.665247
Target:  5'- cCGGCGcGCCGCugccaauGCUGCCggacUCGCg -3'
miRNA:   3'- uGCUGCuUGGCG-------CGGCGGaaguAGCG- -5'
17024 3' -56.3 NC_004333.2 + 22225 0.66 0.655429
Target:  5'- aGCGccGCGuACUG-GCCGCCggCAUCGa -3'
miRNA:   3'- -UGC--UGCuUGGCgCGGCGGaaGUAGCg -5'
17024 3' -56.3 NC_004333.2 + 11632 0.66 0.655429
Target:  5'- cGCGcGCGAACgugucgaaguaGCGCUGCCaguaGUCGCg -3'
miRNA:   3'- -UGC-UGCUUGg----------CGCGGCGGaag-UAGCG- -5'
17024 3' -56.3 NC_004333.2 + 47172 0.66 0.655429
Target:  5'- gACGcCGGAagaaCGCGCUGCCg----CGCa -3'
miRNA:   3'- -UGCuGCUUg---GCGCGGCGGaaguaGCG- -5'
17024 3' -56.3 NC_004333.2 + 42101 0.66 0.655429
Target:  5'- cGCGACGAGgCGUGUCGCgaggugCGCc -3'
miRNA:   3'- -UGCUGCUUgGCGCGGCGgaaguaGCG- -5'
17024 3' -56.3 NC_004333.2 + 39062 0.66 0.655429
Target:  5'- gACGGCGAguaCGCGCgacucgugCGCCgugCGUCGg -3'
miRNA:   3'- -UGCUGCUug-GCGCG--------GCGGaa-GUAGCg -5'
17024 3' -56.3 NC_004333.2 + 44259 0.66 0.655429
Target:  5'- uCGGCcugccGCCGCuGCCGCCUgg--CGCu -3'
miRNA:   3'- uGCUGcu---UGGCG-CGGCGGAaguaGCG- -5'
17024 3' -56.3 NC_004333.2 + 38696 0.66 0.6445
Target:  5'- cGCGcUGAAauucCCGCaGCCGCCggCGcUCGCc -3'
miRNA:   3'- -UGCuGCUU----GGCG-CGGCGGaaGU-AGCG- -5'
17024 3' -56.3 NC_004333.2 + 41129 0.66 0.6445
Target:  5'- uCGACGAGCUGCGC-GCacagUUCAaaccgaccgauUCGCc -3'
miRNA:   3'- uGCUGCUUGGCGCGgCGg---AAGU-----------AGCG- -5'
17024 3' -56.3 NC_004333.2 + 11336 0.66 0.6445
Target:  5'- cGCGAUGAagGCgGCGCgGU--UCGUCGUc -3'
miRNA:   3'- -UGCUGCU--UGgCGCGgCGgaAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 41253 0.66 0.6445
Target:  5'- cUGGCGc-CCGCGCaCGCCUcaaaCGUgCGCa -3'
miRNA:   3'- uGCUGCuuGGCGCG-GCGGAa---GUA-GCG- -5'
17024 3' -56.3 NC_004333.2 + 5175 0.66 0.63356
Target:  5'- -aGACGAaauaGCCaucggucgagaGCGCCGCCcgcUCGUcCGCc -3'
miRNA:   3'- ugCUGCU----UGG-----------CGCGGCGGa--AGUA-GCG- -5'
17024 3' -56.3 NC_004333.2 + 27608 0.66 0.63356
Target:  5'- cACGGCGcGACCcgacGCGCCGaCgaUCAgcggCGCg -3'
miRNA:   3'- -UGCUGC-UUGG----CGCGGC-GgaAGUa---GCG- -5'
17024 3' -56.3 NC_004333.2 + 7843 0.66 0.63356
Target:  5'- uCGACGcGGCCuGCGCCGgCCauUUCcagcUCGCg -3'
miRNA:   3'- uGCUGC-UUGG-CGCGGC-GG--AAGu---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.