miRNA display CGI


Results 1 - 20 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 3' -63.9 NC_004333.2 + 26429 0.66 0.289293
Target:  5'- gAGCugGCgguugaGCUCGucgaacuuCGCUGCGUCGAg -3'
miRNA:   3'- -UCGugCGg-----CGGGCc-------GCGACGCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 1491 0.66 0.289293
Target:  5'- uAGCGCGCCGCCaguuCGGUaUUG-GUCGGu -3'
miRNA:   3'- -UCGUGCGGCGG----GCCGcGACgCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 10765 0.66 0.289293
Target:  5'- uGCACGCCGCgCaaacCGCgaGCGcCGACg -3'
miRNA:   3'- uCGUGCGGCGgGcc--GCGa-CGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 11496 0.66 0.289293
Target:  5'- uGCACcuUCGCCUucaucacgaGGCGCUGCGaaGGCg -3'
miRNA:   3'- uCGUGc-GGCGGG---------CCGCGACGCagCUG- -5'
17026 3' -63.9 NC_004333.2 + 1937 0.66 0.289293
Target:  5'- cAGCugGCCcGCaCCGGCGaCgcggGCcgccuuGUCGAUu -3'
miRNA:   3'- -UCGugCGG-CG-GGCCGC-Ga---CG------CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 28530 0.66 0.289293
Target:  5'- uGCGCGCCGacgcgugcauuCCCGGCaucGCacgUGCuGUCGAa -3'
miRNA:   3'- uCGUGCGGC-----------GGGCCG---CG---ACG-CAGCUg -5'
17026 3' -63.9 NC_004333.2 + 30936 0.66 0.282403
Target:  5'- cGCACGaucaCGUCCGGCGauaCGcCGGCg -3'
miRNA:   3'- uCGUGCg---GCGGGCCGCgacGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 20886 0.66 0.282403
Target:  5'- cGGCgACGa-GCCCGGCGCaGCGcgugcuacUUGGCg -3'
miRNA:   3'- -UCG-UGCggCGGGCCGCGaCGC--------AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 38685 0.66 0.281721
Target:  5'- cAGCugGCCGCC--GCGCUGaaauucccgcagcCGcCGGCg -3'
miRNA:   3'- -UCGugCGGCGGgcCGCGAC-------------GCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 22772 0.66 0.281041
Target:  5'- cGGCACGCUGCa-GGCGCgcucgccggaugGC-UCGAUg -3'
miRNA:   3'- -UCGUGCGGCGggCCGCGa-----------CGcAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 16038 0.66 0.275644
Target:  5'- cAGU-CGCCGCguucgacgugCUGGCGCUuaucGCGUCGGa -3'
miRNA:   3'- -UCGuGCGGCG----------GGCCGCGA----CGCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 16546 0.66 0.275644
Target:  5'- uGGCGCaaCUGCCCGGCGUccgucacGCuGUCGAa -3'
miRNA:   3'- -UCGUGc-GGCGGGCCGCGa------CG-CAGCUg -5'
17026 3' -63.9 NC_004333.2 + 473 0.66 0.275644
Target:  5'- uGC-CGCCGCCC-GCGau-UGUCGGCa -3'
miRNA:   3'- uCGuGCGGCGGGcCGCgacGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 28988 0.66 0.275644
Target:  5'- uGCGCgGCCGCCggguCGGCGUgcgcaucGCGcgCGGCu -3'
miRNA:   3'- uCGUG-CGGCGG----GCCGCGa------CGCa-GCUG- -5'
17026 3' -63.9 NC_004333.2 + 29650 0.66 0.274975
Target:  5'- cGGguUGCCGCCggcugcgaaGGcCGCUGCagcguccGUCGGCg -3'
miRNA:   3'- -UCguGCGGCGGg--------CC-GCGACG-------CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 10964 0.66 0.274975
Target:  5'- gGGCcacaGCGUCGCgcggaacucggcaCCGGCGC-GCGUCGugaGCg -3'
miRNA:   3'- -UCG----UGCGGCG-------------GGCCGCGaCGCAGC---UG- -5'
17026 3' -63.9 NC_004333.2 + 22110 0.66 0.273641
Target:  5'- aAGCGcCGCCGCUgCGGCGCcacugGCaaauccggcgcaccGUCGAUu -3'
miRNA:   3'- -UCGU-GCGGCGG-GCCGCGa----CG--------------CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 33345 0.66 0.273641
Target:  5'- cGGCACGCCGuggucugcgaaugaCCUGcucGCGC-GCGUgCGGCg -3'
miRNA:   3'- -UCGUGCGGC--------------GGGC---CGCGaCGCA-GCUG- -5'
17026 3' -63.9 NC_004333.2 + 6350 0.66 0.269014
Target:  5'- cGCuCGCgGCCgGGCGCcgucgUGCcGUCGGg -3'
miRNA:   3'- uCGuGCGgCGGgCCGCG-----ACG-CAGCUg -5'
17026 3' -63.9 NC_004333.2 + 44445 0.66 0.269014
Target:  5'- uGCAUugauCCGCCCGGgGgUGCG-CGAg -3'
miRNA:   3'- uCGUGc---GGCGGGCCgCgACGCaGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.