miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 6415 0.66 0.685268
Target:  5'- cGGCGCAucGUaaaaucgcGCGGUGCGGUCGUCcucacGGCu -3'
miRNA:   3'- -UCGCGUu-CA--------UGCUGCGCCGGUAG-----UCG- -5'
17137 5' -55.4 NC_004333.2 + 27299 0.66 0.685268
Target:  5'- cGGCGaaaccgAUGAUGCGGCCA--GGCu -3'
miRNA:   3'- -UCGCguuca-UGCUGCGCCGGUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 39065 0.66 0.685268
Target:  5'- --gGCGAGUACG-CGCGacucgugcGCCgugcGUCGGCa -3'
miRNA:   3'- ucgCGUUCAUGCuGCGC--------CGG----UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19553 0.66 0.685268
Target:  5'- gGGCGCcGGUcgcacgguCGGCGCGGCaCAagGGg -3'
miRNA:   3'- -UCGCGuUCAu-------GCUGCGCCG-GUagUCg -5'
17137 5' -55.4 NC_004333.2 + 29009 0.66 0.685268
Target:  5'- uGCGCAuc-GCG-CGCGGCUAgcacgauaacCAGCg -3'
miRNA:   3'- uCGCGUucaUGCuGCGCCGGUa---------GUCG- -5'
17137 5' -55.4 NC_004333.2 + 36822 0.66 0.685268
Target:  5'- uGcCGuCGAGUGCG-CGCuacGGCCAUCgccGGCc -3'
miRNA:   3'- uC-GC-GUUCAUGCuGCG---CCGGUAG---UCG- -5'
17137 5' -55.4 NC_004333.2 + 10052 0.66 0.685268
Target:  5'- cGCGCAaagAGUACGuCgGCGGU--UCGGUa -3'
miRNA:   3'- uCGCGU---UCAUGCuG-CGCCGguAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28201 0.66 0.674229
Target:  5'- cGGCGCGcAGUACGgaaACGCGcGCguugagauuuUCGGCg -3'
miRNA:   3'- -UCGCGU-UCAUGC---UGCGC-CGgu--------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27729 0.66 0.674229
Target:  5'- uGCGCGAucGCGGCGCGaaucUgGUCGGCc -3'
miRNA:   3'- uCGCGUUcaUGCUGCGCc---GgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29897 0.66 0.674229
Target:  5'- uGCGCGaucGGgcCGcGCGCGGCauccUCGGCc -3'
miRNA:   3'- uCGCGU---UCauGC-UGCGCCGgu--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 22771 0.66 0.674229
Target:  5'- aGGCGCAucuGUcAUGA-GUGGCaCGUCGGUu -3'
miRNA:   3'- -UCGCGUu--CA-UGCUgCGCCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 15488 0.66 0.674229
Target:  5'- gAGCGCAacaGGgcUGcuCGCGGCgGUCAccgGCg -3'
miRNA:   3'- -UCGCGU---UCauGCu-GCGCCGgUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 13352 0.66 0.674229
Target:  5'- cGGCaCGGuGUACgGGCGCGGCacgagCGGCg -3'
miRNA:   3'- -UCGcGUU-CAUG-CUGCGCCGgua--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 22873 0.66 0.674229
Target:  5'- cAGCGCGacgaacaccuGGUACGcaacgUGCGGCgCAUCGaacGCa -3'
miRNA:   3'- -UCGCGU----------UCAUGCu----GCGCCG-GUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 39331 0.66 0.674229
Target:  5'- cGCGCGcGUGCGccuGC-CGGCCGcUCGGg -3'
miRNA:   3'- uCGCGUuCAUGC---UGcGCCGGU-AGUCg -5'
17137 5' -55.4 NC_004333.2 + 23487 0.66 0.674229
Target:  5'- cGGCgGCGGGUACG-UGCcgGGCUAcCAGUa -3'
miRNA:   3'- -UCG-CGUUCAUGCuGCG--CCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 43306 0.66 0.673123
Target:  5'- uGCGCucGUGCcgaucgagccGACGCcggaaaucaugacGGCCAUCuGGCa -3'
miRNA:   3'- uCGCGuuCAUG----------CUGCG-------------CCGGUAG-UCG- -5'
17137 5' -55.4 NC_004333.2 + 28529 0.66 0.670909
Target:  5'- uGGCGCGcGUAacugGCGGCCcgacaaguacaugaAUCAGCg -3'
miRNA:   3'- -UCGCGUuCAUgcugCGCCGG--------------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 40862 0.66 0.663149
Target:  5'- cGGgGCGAGcgacAUGACGCGuGCCugCGGCc -3'
miRNA:   3'- -UCgCGUUCa---UGCUGCGC-CGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 41649 0.66 0.663149
Target:  5'- gGGCGCGGGc----UGCGGCCGUacgcCGGCa -3'
miRNA:   3'- -UCGCGUUCaugcuGCGCCGGUA----GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.