miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17199 3' -62.9 NC_004333.2 + 18261 0.66 0.325888
Target:  5'- cCGCGCGCacgacgagcGCAucacCCGGCAcGC-CGGCa -3'
miRNA:   3'- cGCGCGCGa--------CGU----GGCCGU-CGuGCCGg -5'
17199 3' -62.9 NC_004333.2 + 38300 0.66 0.325888
Target:  5'- aCGCGCGaccgUGCACgCGGCGaC-CGGCg -3'
miRNA:   3'- cGCGCGCg---ACGUG-GCCGUcGuGCCGg -5'
17199 3' -62.9 NC_004333.2 + 6799 0.66 0.325888
Target:  5'- aGCGCGCcgaucuucgccuGUcGCAaCGGCGGCAcucCGGCg -3'
miRNA:   3'- -CGCGCG------------CGaCGUgGCCGUCGU---GCCGg -5'
17199 3' -62.9 NC_004333.2 + 45066 0.66 0.325888
Target:  5'- cGCGCG-GCcGCGCCcgGGCaAGaaaACGGCg -3'
miRNA:   3'- -CGCGCgCGaCGUGG--CCG-UCg--UGCCGg -5'
17199 3' -62.9 NC_004333.2 + 27852 0.66 0.325888
Target:  5'- aGCaCGuCGCUGagcuuCACCGGCccugcguucgAGUACGGCg -3'
miRNA:   3'- -CGcGC-GCGAC-----GUGGCCG----------UCGUGCCGg -5'
17199 3' -62.9 NC_004333.2 + 4277 0.66 0.325888
Target:  5'- aCGCGCaGCUGCAaauCCaGGCgcagaAGCACacGCCg -3'
miRNA:   3'- cGCGCG-CGACGU---GG-CCG-----UCGUGc-CGG- -5'
17199 3' -62.9 NC_004333.2 + 6678 0.66 0.325888
Target:  5'- cUGCGacuGCgGCGCUgGGCGGCGC-GCCg -3'
miRNA:   3'- cGCGCg--CGaCGUGG-CCGUCGUGcCGG- -5'
17199 3' -62.9 NC_004333.2 + 272 0.66 0.325888
Target:  5'- gGCGCaaGCcaaGCCGGCGggcGCACGGgCa -3'
miRNA:   3'- -CGCGcgCGacgUGGCCGU---CGUGCCgG- -5'
17199 3' -62.9 NC_004333.2 + 23812 0.66 0.3236
Target:  5'- cGCGCGUcgaGCUGC-CCGuuacgacguccgacGCAacucGCGCGaGCCa -3'
miRNA:   3'- -CGCGCG---CGACGuGGC--------------CGU----CGUGC-CGG- -5'
17199 3' -62.9 NC_004333.2 + 1986 0.66 0.321325
Target:  5'- uGCGaguucguaGCGUUaCGCCGGCGcggaugaugcccgacGuCACGGCCg -3'
miRNA:   3'- -CGCg-------CGCGAcGUGGCCGU---------------C-GUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 45744 0.66 0.318309
Target:  5'- uCGCGCGCccgcucgguaggUGCAUgcGCAGCGCGcGCg -3'
miRNA:   3'- cGCGCGCG------------ACGUGgcCGUCGUGC-CGg -5'
17199 3' -62.9 NC_004333.2 + 46177 0.66 0.318309
Target:  5'- -aGCGCGCaccGCGCuCGGCcaaGGuUGCGGUCa -3'
miRNA:   3'- cgCGCGCGa--CGUG-GCCG---UC-GUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 38958 0.66 0.318309
Target:  5'- aGCGCGaaGCgGCG-CGGguGCGCGGaCg -3'
miRNA:   3'- -CGCGCg-CGaCGUgGCCguCGUGCCgG- -5'
17199 3' -62.9 NC_004333.2 + 48023 0.66 0.318309
Target:  5'- cCGCGCGCU---CUGGCGuGUugGGCg -3'
miRNA:   3'- cGCGCGCGAcguGGCCGU-CGugCCGg -5'
17199 3' -62.9 NC_004333.2 + 18549 0.66 0.310865
Target:  5'- cCGgGUGCgGCAgCCGGC-GCGgCGGCg -3'
miRNA:   3'- cGCgCGCGaCGU-GGCCGuCGU-GCCGg -5'
17199 3' -62.9 NC_004333.2 + 21862 0.66 0.310865
Target:  5'- gGCGCGCGCUacaaGCUGGUucgcuGCGCauaGCCc -3'
miRNA:   3'- -CGCGCGCGAcg--UGGCCGu----CGUGc--CGG- -5'
17199 3' -62.9 NC_004333.2 + 30628 0.66 0.310865
Target:  5'- uCGUGCaGCaGCG-CGGCaaGGCGCGGCg -3'
miRNA:   3'- cGCGCG-CGaCGUgGCCG--UCGUGCCGg -5'
17199 3' -62.9 NC_004333.2 + 27281 0.66 0.310865
Target:  5'- aCG-GCGaUGUACCGcGCgaAGCACGGUCu -3'
miRNA:   3'- cGCgCGCgACGUGGC-CG--UCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 15472 0.66 0.310865
Target:  5'- cGCG-GCGUuuguuucgcuugUGCACCGGCcacguuacaAGCAuuCGGCg -3'
miRNA:   3'- -CGCgCGCG------------ACGUGGCCG---------UCGU--GCCGg -5'
17199 3' -62.9 NC_004333.2 + 12065 0.66 0.310865
Target:  5'- cCGCaucCGUUGCACC-GCGaUACGGCCg -3'
miRNA:   3'- cGCGc--GCGACGUGGcCGUcGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.