Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17210 | 5' | -56 | NC_004333.2 | + | 31362 | 0.66 | 0.642837 |
Target: 5'- gGCGCagGUGCGGCCGGucuCGCCGg--- -3' miRNA: 3'- gCGUGa-CGCGCUGGUUu--GCGGUgcau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 37171 | 0.66 | 0.642837 |
Target: 5'- cCGCA--GCGCGGCgAcACGCCGCu-- -3' miRNA: 3'- -GCGUgaCGCGCUGgUuUGCGGUGcau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 15356 | 0.66 | 0.642837 |
Target: 5'- gGCGCagacGCGCGcGCUGAACGCCgaaugcuuguaACGUGg -3' miRNA: 3'- gCGUGa---CGCGC-UGGUUUGCGG-----------UGCAU- -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 5041 | 0.66 | 0.642837 |
Target: 5'- uGCGCUGCcgcaaggcuCGGCCAuuGCGcCCugGUAc -3' miRNA: 3'- gCGUGACGc--------GCUGGUu-UGC-GGugCAU- -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 41203 | 0.66 | 0.642837 |
Target: 5'- cCGCACUGCGUGAgCgGAACgGCCu---- -3' miRNA: 3'- -GCGUGACGCGCU-GgUUUG-CGGugcau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 48175 | 0.66 | 0.642837 |
Target: 5'- gCGCGgUGCGCGcgcccgguuGCCGccuGCGCCuCGUc -3' miRNA: 3'- -GCGUgACGCGC---------UGGUu--UGCGGuGCAu -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 37381 | 0.66 | 0.641725 |
Target: 5'- aGCACcGcCGCGACCGAcuggaacGCGUCGCc-- -3' miRNA: 3'- gCGUGaC-GCGCUGGUU-------UGCGGUGcau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 12401 | 0.66 | 0.641725 |
Target: 5'- gCGCGCcagUGuCGCcgccuucGGCCAAGCGCUggACGUAg -3' miRNA: 3'- -GCGUG---AC-GCG-------CUGGUUUGCGG--UGCAU- -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 43463 | 0.66 | 0.631709 |
Target: 5'- gGCgGCUGCGgGACCAuAGCGauugCGCGUu -3' miRNA: 3'- gCG-UGACGCgCUGGU-UUGCg---GUGCAu -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 42015 | 0.66 | 0.631709 |
Target: 5'- uGCGCgugaagcGCGCGGCCAAcgaGCGggGCGUGc -3' miRNA: 3'- gCGUGa------CGCGCUGGUU---UGCggUGCAU- -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 30236 | 0.66 | 0.631709 |
Target: 5'- aCGCGCcgcGCGCGAUCAGuGCGUUcaugACGUAc -3' miRNA: 3'- -GCGUGa--CGCGCUGGUU-UGCGG----UGCAU- -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 41650 | 0.66 | 0.631709 |
Target: 5'- gGCGCggGCuGCGGCCGuACGCCGg--- -3' miRNA: 3'- gCGUGa-CG-CGCUGGUuUGCGGUgcau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 8235 | 0.66 | 0.631709 |
Target: 5'- aCGCGaugGaCGCGGCCGAccuguCGCCACa-- -3' miRNA: 3'- -GCGUga-C-GCGCUGGUUu----GCGGUGcau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 47071 | 0.66 | 0.631709 |
Target: 5'- gCGCGCaacgugaGCGCGAUCuuucGCGCCGCu-- -3' miRNA: 3'- -GCGUGa------CGCGCUGGuu--UGCGGUGcau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 10971 | 0.66 | 0.631709 |
Target: 5'- aCGCACUGuCGuCGGCgCAAgugacugucGCGCCgGCGUu -3' miRNA: 3'- -GCGUGAC-GC-GCUG-GUU---------UGCGG-UGCAu -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 37443 | 0.66 | 0.631709 |
Target: 5'- aGgACggccGCGCGACgCGGugcACGUCGCGUAg -3' miRNA: 3'- gCgUGa---CGCGCUG-GUU---UGCGGUGCAU- -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 4043 | 0.66 | 0.630596 |
Target: 5'- uCGagaaACUGCGUGAuauaccaCCAGcCGCCGCGa- -3' miRNA: 3'- -GCg---UGACGCGCU-------GGUUuGCGGUGCau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 29991 | 0.66 | 0.620582 |
Target: 5'- gGCGCcgaGCGCGAgcaCCAugcGGCGCCGCu-- -3' miRNA: 3'- gCGUGa--CGCGCU---GGU---UUGCGGUGcau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 6718 | 0.66 | 0.620582 |
Target: 5'- gCGCGCcgaGCGCGcuGCCGAGCGCgAuCGa- -3' miRNA: 3'- -GCGUGa--CGCGC--UGGUUUGCGgU-GCau -5' |
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17210 | 5' | -56 | NC_004333.2 | + | 12382 | 0.66 | 0.620582 |
Target: 5'- cCGCGCgaggcugGCGCG-CaGGACGCCGCa-- -3' miRNA: 3'- -GCGUGa------CGCGCuGgUUUGCGGUGcau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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