Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18286 | 3' | -58.8 | NC_004681.1 | + | 25088 | 0.66 | 0.697679 |
Target: 5'- gCCGCCGACGCCuGUGccgccagagcccccGUCG-CCGg -3' miRNA: 3'- -GGCGGCUGCGGcUACuc------------CAGCuGGCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 38326 | 0.66 | 0.696668 |
Target: 5'- gCCuaUGGCGCCGccGcGGGacgucuUCGGCCGCc -3' miRNA: 3'- -GGcgGCUGCGGCuaC-UCC------AGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 2840 | 0.66 | 0.696668 |
Target: 5'- aCCGCCGcuacACGgucaCCGuccccGAGGcgcUCGACCGUg -3' miRNA: 3'- -GGCGGC----UGC----GGCua---CUCC---AGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 3588 | 0.66 | 0.696668 |
Target: 5'- gUCGCUGACGgugaacaguCCGGUGAaaucuacgGcGUCGcCCGCg -3' miRNA: 3'- -GGCGGCUGC---------GGCUACU--------C-CAGCuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 67912 | 0.66 | 0.696668 |
Target: 5'- aCGCaCGACGCUGucauaGGGGcCGAacaCGCc -3' miRNA: 3'- gGCG-GCUGCGGCua---CUCCaGCUg--GCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 16936 | 0.66 | 0.686535 |
Target: 5'- gUGCCGGuCGuuGAUGuAGcUCGAcuCCGCg -3' miRNA: 3'- gGCGGCU-GCggCUAC-UCcAGCU--GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 69103 | 0.66 | 0.686535 |
Target: 5'- cUCGUCGugagguucGCGCgGAUcGAGGUCGuugUCGCa -3' miRNA: 3'- -GGCGGC--------UGCGgCUA-CUCCAGCu--GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 45200 | 0.66 | 0.686535 |
Target: 5'- gCGUCGGCcCCGGucuUGAGcgaGACCGCg -3' miRNA: 3'- gGCGGCUGcGGCU---ACUCcagCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 61443 | 0.66 | 0.686535 |
Target: 5'- -aGCCGACGCCaacaaGUGGGG-CGAugacgacguuCCGUu -3' miRNA: 3'- ggCGGCUGCGGc----UACUCCaGCU----------GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 34011 | 0.66 | 0.686535 |
Target: 5'- gUGcCCGuCGUCGu---GGUCGACUGCg -3' miRNA: 3'- gGC-GGCuGCGGCuacuCCAGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 26309 | 0.66 | 0.686535 |
Target: 5'- gCCGCCGugGCgGGccAGGaCGuuuCCGUc -3' miRNA: 3'- -GGCGGCugCGgCUacUCCaGCu--GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 26868 | 0.66 | 0.686535 |
Target: 5'- aCCGCCGA-GCCcgguaAUGGGaGUgGACaCGCc -3' miRNA: 3'- -GGCGGCUgCGGc----UACUC-CAgCUG-GCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 26298 | 0.66 | 0.676357 |
Target: 5'- uCCGaCGugGCCGcacUGcgccGGGUCGAUUGUg -3' miRNA: 3'- -GGCgGCugCGGCu--AC----UCCAGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 8293 | 0.66 | 0.676357 |
Target: 5'- gCGCgGACGCCGccaaggacggccuGgacaacgacauccccGAGGUCGAgguCCGCa -3' miRNA: 3'- gGCGgCUGCGGC-------------Ua--------------CUCCAGCU---GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 51421 | 0.66 | 0.676356 |
Target: 5'- uCCGCggCGACGgUGAUGAcGUCGGCgGa -3' miRNA: 3'- -GGCG--GCUGCgGCUACUcCAGCUGgCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 36089 | 0.66 | 0.676356 |
Target: 5'- aCGagauCGACGCCGAguugGAgcuggcaaucauGGgcuaCGACCGCa -3' miRNA: 3'- gGCg---GCUGCGGCUa---CU------------CCa---GCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 5277 | 0.66 | 0.676356 |
Target: 5'- -gGCgGGCGCgGAcaGGGUCuGACCGUu -3' miRNA: 3'- ggCGgCUGCGgCUacUCCAG-CUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 9072 | 0.66 | 0.676356 |
Target: 5'- gCGCCGACagcgaggagGCCGAggaggcggUGAagccGGUCGAaCGCu -3' miRNA: 3'- gGCGGCUG---------CGGCU--------ACU----CCAGCUgGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 16569 | 0.66 | 0.673296 |
Target: 5'- uUGCCGACGagcgcuacaagcccCCGgcGuccccGGUCGACCuGCa -3' miRNA: 3'- gGCGGCUGC--------------GGCuaCu----CCAGCUGG-CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 67178 | 0.66 | 0.670231 |
Target: 5'- uCCGUCGcauCGCCaccgagaaggaaggcGAUGAGGcugUCGgcaACCGCa -3' miRNA: 3'- -GGCGGCu--GCGG---------------CUACUCC---AGC---UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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