miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18770 3' -52.8 NC_004683.1 + 24062 0.66 0.873645
Target:  5'- gGCGugGuGAUCGcgccgaggggcacguAGCcgugcucGACGaGCUUGGCc -3'
miRNA:   3'- aCGCugC-CUAGU---------------UUG-------CUGC-CGAACCG- -5'
18770 3' -52.8 NC_004683.1 + 6892 0.66 0.871264
Target:  5'- cGCGACGGcgCGAucguCGucACGGCUacccacGGUu -3'
miRNA:   3'- aCGCUGCCuaGUUu---GC--UGCCGAa-----CCG- -5'
18770 3' -52.8 NC_004683.1 + 7327 0.66 0.871264
Target:  5'- cGCGGCGGugcuggcagcCAAGCcgGACGGUgagUUGGUc -3'
miRNA:   3'- aCGCUGCCua--------GUUUG--CUGCCG---AACCG- -5'
18770 3' -52.8 NC_004683.1 + 40788 0.66 0.871264
Target:  5'- cGCGACcGAcgcgcUCGc-CGACGGCgaGGCc -3'
miRNA:   3'- aCGCUGcCU-----AGUuuGCUGCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 52469 0.66 0.871264
Target:  5'- cGCGACaucaccacgcaGGGUCucGCGcGCuGGCUcGGCa -3'
miRNA:   3'- aCGCUG-----------CCUAGuuUGC-UG-CCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 46711 0.66 0.871264
Target:  5'- gGUG-CGGGUCGGcugauCGACGgGCgcGGCg -3'
miRNA:   3'- aCGCuGCCUAGUUu----GCUGC-CGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 24787 0.66 0.871264
Target:  5'- gGCGuuGCGG-UC--GCGGCGGCgcgcGGCc -3'
miRNA:   3'- aCGC--UGCCuAGuuUGCUGCCGaa--CCG- -5'
18770 3' -52.8 NC_004683.1 + 37103 0.66 0.871264
Target:  5'- gGCGGCGuGUCGGuaaACGGCUguguguugcUGGCg -3'
miRNA:   3'- aCGCUGCcUAGUUugcUGCCGA---------ACCG- -5'
18770 3' -52.8 NC_004683.1 + 5827 0.66 0.866433
Target:  5'- gGCGGCGGugcccgCGAGCG-CGGUgacgaugcccgugGGCu -3'
miRNA:   3'- aCGCUGCCua----GUUUGCuGCCGaa-----------CCG- -5'
18770 3' -52.8 NC_004683.1 + 12689 0.66 0.863163
Target:  5'- gGCGACGaAUCGcACGAgguuguCGGCgaguccgGGCa -3'
miRNA:   3'- aCGCUGCcUAGUuUGCU------GCCGaa-----CCG- -5'
18770 3' -52.8 NC_004683.1 + 23619 0.66 0.863163
Target:  5'- cGCGAgaaguucaCGGA-CAgcAGCGAucuCGGCUUGGg -3'
miRNA:   3'- aCGCU--------GCCUaGU--UUGCU---GCCGAACCg -5'
18770 3' -52.8 NC_004683.1 + 29045 0.66 0.863163
Target:  5'- aUGUGugGGAcuUCGggaGACGcUGGCgccgUGGUa -3'
miRNA:   3'- -ACGCugCCU--AGU---UUGCuGCCGa---ACCG- -5'
18770 3' -52.8 NC_004683.1 + 37269 0.66 0.863163
Target:  5'- cGCGGCGcg-CAAACGcCGGauuguCUUGGUg -3'
miRNA:   3'- aCGCUGCcuaGUUUGCuGCC-----GAACCG- -5'
18770 3' -52.8 NC_004683.1 + 16930 0.66 0.863163
Target:  5'- cGCGACGacGAUC--GCGuACGGUUcGGUg -3'
miRNA:   3'- aCGCUGC--CUAGuuUGC-UGCCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 17808 0.66 0.862339
Target:  5'- gGCGAugcCGGu---GAUGcccaucaGCGGCUUGGCg -3'
miRNA:   3'- aCGCU---GCCuaguUUGC-------UGCCGAACCG- -5'
18770 3' -52.8 NC_004683.1 + 42314 0.66 0.860685
Target:  5'- cGCGGCGuggguguucgccguGAUC--GCGugGGUUgGGCu -3'
miRNA:   3'- aCGCUGC--------------CUAGuuUGCugCCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 20099 0.66 0.854817
Target:  5'- -uCGGCGGuAUC-GACGGCGGCUacaacgcGGUg -3'
miRNA:   3'- acGCUGCC-UAGuUUGCUGCCGAa------CCG- -5'
18770 3' -52.8 NC_004683.1 + 12988 0.66 0.853969
Target:  5'- aGUGGCuGcgCGAGCG-CGGCUUccugccgGGCg -3'
miRNA:   3'- aCGCUGcCuaGUUUGCuGCCGAA-------CCG- -5'
18770 3' -52.8 NC_004683.1 + 45529 0.66 0.852266
Target:  5'- cUGCGGCGGugcggaccucgcgaGUCuuGCG-CGcCUUGGCc -3'
miRNA:   3'- -ACGCUGCC--------------UAGuuUGCuGCcGAACCG- -5'
18770 3' -52.8 NC_004683.1 + 43483 0.66 0.846233
Target:  5'- gGCGuagagcCGGAUCGccUGGCGGUUgcGGCg -3'
miRNA:   3'- aCGCu-----GCCUAGUuuGCUGCCGAa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.