miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 5' -56.1 NC_004683.1 + 17775 0.65 0.736695
Target:  5'- gCCCguggACCGAGAu--CCUCGAagaggucaacgugaCGCCg -3'
miRNA:   3'- aGGGag--UGGCUCUuguGGAGCU--------------GCGG- -5'
18775 5' -56.1 NC_004683.1 + 15147 0.66 0.729457
Target:  5'- -gCCUgGgUGAGGACGCCUUGcCgGCCu -3'
miRNA:   3'- agGGAgUgGCUCUUGUGGAGCuG-CGG- -5'
18775 5' -56.1 NC_004683.1 + 10492 0.66 0.729457
Target:  5'- aUCCCgCGCCccaucaGAGAacGCACC-CGuaaACGCCu -3'
miRNA:   3'- -AGGGaGUGG------CUCU--UGUGGaGC---UGCGG- -5'
18775 5' -56.1 NC_004683.1 + 10441 0.66 0.729457
Target:  5'- gCCCgCGUCGGcGAACGCCuucUCGGCGCg -3'
miRNA:   3'- aGGGaGUGGCU-CUUGUGG---AGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 56243 0.66 0.729457
Target:  5'- aCCCgaCAUCGAGAACGCgCUacaGCGCg -3'
miRNA:   3'- aGGGa-GUGGCUCUUGUG-GAgc-UGCGg -5'
18775 5' -56.1 NC_004683.1 + 44558 0.66 0.729457
Target:  5'- gUUCCUCGCCGAuu-CGgC-CGGCGUCa -3'
miRNA:   3'- -AGGGAGUGGCUcuuGUgGaGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 40305 0.66 0.729457
Target:  5'- ---aUCGCCGAGGGCAUCgccgCGGCGgUg -3'
miRNA:   3'- agggAGUGGCUCUUGUGGa---GCUGCgG- -5'
18775 5' -56.1 NC_004683.1 + 39593 0.66 0.729457
Target:  5'- aCCC-CGaaGAGGACcUCUgGGCGCCc -3'
miRNA:   3'- aGGGaGUggCUCUUGuGGAgCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 8770 0.66 0.729457
Target:  5'- cCCCUCgucgcgGCCGAGcaucGACACC--GACGaCCa -3'
miRNA:   3'- aGGGAG------UGGCUC----UUGUGGagCUGC-GG- -5'
18775 5' -56.1 NC_004683.1 + 42269 0.66 0.729457
Target:  5'- gUCCCgaguUCGAGGGCgugGCCUCauGACGCg -3'
miRNA:   3'- -AGGGagu-GGCUCUUG---UGGAG--CUGCGg -5'
18775 5' -56.1 NC_004683.1 + 8070 0.66 0.729457
Target:  5'- gCCgUUCugUGAGGugACCcgcaucgaCGGCGCCg -3'
miRNA:   3'- aGG-GAGugGCUCUugUGGa-------GCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 43049 0.66 0.729457
Target:  5'- gCCCUguUugCGAGccucaGCCUCGgccuuGCGCCa -3'
miRNA:   3'- aGGGA--GugGCUCuug--UGGAGC-----UGCGG- -5'
18775 5' -56.1 NC_004683.1 + 45833 0.66 0.723216
Target:  5'- -aCCUgGCCGucGAGacgcacaacacgaauCACCcCGACGCCg -3'
miRNA:   3'- agGGAgUGGCu-CUU---------------GUGGaGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 43890 0.66 0.719038
Target:  5'- gCCCU-ACCGc-GACACC-CGGCGCg -3'
miRNA:   3'- aGGGAgUGGCucUUGUGGaGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 50335 0.66 0.719038
Target:  5'- aCCCUgauggGCUGAGAcCGCCucgUCGAUGUCg -3'
miRNA:   3'- aGGGAg----UGGCUCUuGUGG---AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 21157 0.66 0.719038
Target:  5'- aUCCCg-GCCGcGGAccacggugucgGCACCgaCGACGCUg -3'
miRNA:   3'- -AGGGagUGGC-UCU-----------UGUGGa-GCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 26739 0.66 0.719038
Target:  5'- aCCCgUCugCGAuGAGCuucuuugccACCUCGGCGg- -3'
miRNA:   3'- aGGG-AGugGCU-CUUG---------UGGAGCUGCgg -5'
18775 5' -56.1 NC_004683.1 + 17427 0.66 0.719038
Target:  5'- aUgUUCACCGAcuacgucgaGAACACCcCGugGCg -3'
miRNA:   3'- aGgGAGUGGCU---------CUUGUGGaGCugCGg -5'
18775 5' -56.1 NC_004683.1 + 42111 0.66 0.708536
Target:  5'- gCCCUCGCCGu---UGCC-CGAccCGCCu -3'
miRNA:   3'- aGGGAGUGGCucuuGUGGaGCU--GCGG- -5'
18775 5' -56.1 NC_004683.1 + 11846 0.66 0.702199
Target:  5'- aUCCUCACCgGAGAccugcccgcuggugcGCACC-CGACagauauuccgGCCc -3'
miRNA:   3'- aGGGAGUGG-CUCU---------------UGUGGaGCUG----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.