Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18787 | 5' | -55.7 | NC_004683.1 | + | 45157 | 0.66 | 0.756738 |
Target: 5'- cGUC-GUGGuCGGUCGgcuGAUUGGCCCa -3' miRNA: 3'- -CGGcCACC-GCCAGUgcuUUGACUGGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 5534 | 0.66 | 0.756738 |
Target: 5'- cGCCGGUGGCG---ACGAc-CUGGCg- -3' miRNA: 3'- -CGGCCACCGCcagUGCUuuGACUGgg -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 5896 | 0.66 | 0.747599 |
Target: 5'- uCCGGcaguucgacacccagGGCGG-CGCGGGACUgugGACCa -3' miRNA: 3'- cGGCCa--------------CCGCCaGUGCUUUGA---CUGGg -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 27054 | 0.66 | 0.746578 |
Target: 5'- gGCCGGccugcccGGCGcUCACGcguACgcgcgGACCCu -3' miRNA: 3'- -CGGCCa------CCGCcAGUGCuu-UGa----CUGGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 10700 | 0.66 | 0.746578 |
Target: 5'- cGUCGGUGGCa-UCGCGGAcC--GCCCg -3' miRNA: 3'- -CGGCCACCGccAGUGCUUuGacUGGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 14869 | 0.66 | 0.746578 |
Target: 5'- -aCGGUGauGCGuUCGCGGGugcuGCUGAUCCc -3' miRNA: 3'- cgGCCAC--CGCcAGUGCUU----UGACUGGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 44855 | 0.66 | 0.746578 |
Target: 5'- cGCCguGGUGGCccGGcCugGAGGCcgaGugCCg -3' miRNA: 3'- -CGG--CCACCG--CCaGugCUUUGa--CugGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 21694 | 0.66 | 0.736306 |
Target: 5'- aCCGG-GGUGGUCgguGCGGGuggcGCUGGCa- -3' miRNA: 3'- cGGCCaCCGCCAG---UGCUU----UGACUGgg -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 53112 | 0.66 | 0.736306 |
Target: 5'- gGCCGG-GGCGuUCGucguUGGAGgUGACCa -3' miRNA: 3'- -CGGCCaCCGCcAGU----GCUUUgACUGGg -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 2275 | 0.66 | 0.736306 |
Target: 5'- -gCGGcacaGGCGGUCGCGGccaguAgUGcACCCg -3' miRNA: 3'- cgGCCa---CCGCCAGUGCUu----UgAC-UGGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 51698 | 0.66 | 0.736306 |
Target: 5'- gGCuCGGgGGCGGgcuugaUCGCGucGAGCUcGGCCUg -3' miRNA: 3'- -CG-GCCaCCGCC------AGUGC--UUUGA-CUGGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 12009 | 0.66 | 0.731131 |
Target: 5'- aGCCGGUaucgacGCGGgccagcgcgcccgCGCGGggcuaccgccggaGGCUGGCCCc -3' miRNA: 3'- -CGGCCAc-----CGCCa------------GUGCU-------------UUGACUGGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 39965 | 0.66 | 0.725933 |
Target: 5'- cGCCGGcUGGUGacucgCGuCGAggUUGACCg -3' miRNA: 3'- -CGGCC-ACCGCca---GU-GCUuuGACUGGg -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 44783 | 0.66 | 0.725933 |
Target: 5'- cGUCGGcgGGCGcGUCAUGA--CUGcACCa -3' miRNA: 3'- -CGGCCa-CCGC-CAGUGCUuuGAC-UGGg -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 56292 | 0.66 | 0.725933 |
Target: 5'- cGUCGGggauacUGGCGGcCGagguaGAAGCUGACg- -3' miRNA: 3'- -CGGCC------ACCGCCaGUg----CUUUGACUGgg -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 49089 | 0.66 | 0.72489 |
Target: 5'- cCCGGUcgggcuugagggcGGCGGgaUCGCG--GCgGGCCCg -3' miRNA: 3'- cGGCCA-------------CCGCC--AGUGCuuUGaCUGGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 24483 | 0.66 | 0.715469 |
Target: 5'- cCCGGauccGGCGcccCAUGGAACgucgGACCCa -3' miRNA: 3'- cGGCCa---CCGCca-GUGCUUUGa---CUGGG- -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 31443 | 0.66 | 0.715469 |
Target: 5'- cGgCGGcGGCGGUCACccaAAAC-GGCCa -3' miRNA: 3'- -CgGCCaCCGCCAGUGc--UUUGaCUGGg -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 13412 | 0.66 | 0.715469 |
Target: 5'- gGCUcgaGGgGGUGGUCGCcGGugUGGCCg -3' miRNA: 3'- -CGG---CCaCCGCCAGUGcUUugACUGGg -5' |
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18787 | 5' | -55.7 | NC_004683.1 | + | 46594 | 0.66 | 0.714419 |
Target: 5'- cGCCaGUGGCuugucccGGUCucCGAuccGCUGcCCCa -3' miRNA: 3'- -CGGcCACCG-------CCAGu-GCUu--UGACuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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