Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 18200 | 0.66 | 0.369312 |
Target: 5'- gCGGUaggUGCCGgCGGCGAcCGCGaUCg -3' miRNA: 3'- aGCCGga-GCGGCaGCCGCUcGCGC-AG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 40237 | 0.66 | 0.369312 |
Target: 5'- -aGGCCcgCGCCGagcugcaGGC--GCGCGUCg -3' miRNA: 3'- agCCGGa-GCGGCag-----CCGcuCGCGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 46408 | 0.66 | 0.361185 |
Target: 5'- gCGGaCCUgccCGCaCGUCGGgcacaccgccuCGGGCcGCGUCa -3' miRNA: 3'- aGCC-GGA---GCG-GCAGCC-----------GCUCG-CGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 13259 | 0.66 | 0.361185 |
Target: 5'- aUCGGCgUCGCCGUCGacCGcAGCGg--- -3' miRNA: 3'- -AGCCGgAGCGGCAGCc-GC-UCGCgcag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 31534 | 0.66 | 0.361185 |
Target: 5'- gUCGGCgUCGgccaCGcCGGCGAGCuCGg- -3' miRNA: 3'- -AGCCGgAGCg---GCaGCCGCUCGcGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 28641 | 0.66 | 0.361185 |
Target: 5'- aCGGCCgagacuuggCGgCGcUCGGCGuGC-CGUCu -3' miRNA: 3'- aGCCGGa--------GCgGC-AGCCGCuCGcGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 23047 | 0.66 | 0.361185 |
Target: 5'- gUCGGUCUCGgUGUCGGCcuGCucgGCGg- -3' miRNA: 3'- -AGCCGGAGCgGCAGCCGcuCG---CGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 32154 | 0.66 | 0.361185 |
Target: 5'- cUCGGCC-CGuuGUUuaGGCGcucagggcAGCGCGg- -3' miRNA: 3'- -AGCCGGaGCggCAG--CCGC--------UCGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 44455 | 0.66 | 0.361185 |
Target: 5'- cUCGGCgauCUCGCCGUCGauguaGUcGGC-CGUCg -3' miRNA: 3'- -AGCCG---GAGCGGCAGC-----CGcUCGcGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 4473 | 0.66 | 0.356369 |
Target: 5'- cUCGGCCucaucggcgugggacUCGUCGUCgcuGGCGucucgcuGCGCGg- -3' miRNA: 3'- -AGCCGG---------------AGCGGCAG---CCGCu------CGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 861 | 0.66 | 0.353184 |
Target: 5'- --uGCCUCGCgUGUCGGCGucaucucGUGCGcCg -3' miRNA: 3'- agcCGGAGCG-GCAGCCGCu------CGCGCaG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 391 | 0.66 | 0.353184 |
Target: 5'- cUGGCgUCGCUGUCGaaagagcuGCGGGCG-GUg -3' miRNA: 3'- aGCCGgAGCGGCAGC--------CGCUCGCgCAg -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 10256 | 0.66 | 0.353184 |
Target: 5'- aCGcGCCUCGC--UCGGCGAGaugaacaCGUCg -3' miRNA: 3'- aGC-CGGAGCGgcAGCCGCUCgc-----GCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 4927 | 0.66 | 0.353184 |
Target: 5'- aUCGGCaa-GCCucagagCGGCGGccagcggcgcauGCGCGUCg -3' miRNA: 3'- -AGCCGgagCGGca----GCCGCU------------CGCGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 36114 | 0.66 | 0.353184 |
Target: 5'- gUCGGgcgaUCUCGUCGaUCGGCGAuCGCuauGUCg -3' miRNA: 3'- -AGCC----GGAGCGGC-AGCCGCUcGCG---CAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 12327 | 0.66 | 0.345309 |
Target: 5'- gUCGGU---GCUGUCGGCGcGCaacaGCGUCg -3' miRNA: 3'- -AGCCGgagCGGCAGCCGCuCG----CGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 7063 | 0.66 | 0.345309 |
Target: 5'- cUCGGUCUCGaCGUC--UGGGCGCGcCg -3' miRNA: 3'- -AGCCGGAGCgGCAGccGCUCGCGCaG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 19772 | 0.66 | 0.33756 |
Target: 5'- -aGGUUgugCGCCagugauugcagGUUGGCGAGCGCuUCg -3' miRNA: 3'- agCCGGa--GCGG-----------CAGCCGCUCGCGcAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 53600 | 0.66 | 0.33756 |
Target: 5'- cCGGCCgcgucuUCGCCGcCGaGCugcGGCGCGaUCa -3' miRNA: 3'- aGCCGG------AGCGGCaGC-CGc--UCGCGC-AG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 13717 | 0.66 | 0.33756 |
Target: 5'- cCGGUUUCGCCGgugcgCGGCcuGCGCu-- -3' miRNA: 3'- aGCCGGAGCGGCa----GCCGcuCGCGcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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