miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18958 3' -64.2 NC_004683.1 + 34984 0.66 0.326878
Target:  5'- cGCCGCaaacaaGCCCguGCCGCaCGucAGGCGCUc-- -3'
miRNA:   3'- -CGGCG------UGGG--CGGCG-GU--UCCGCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 6823 0.66 0.326878
Target:  5'- aGCgacaGCACgCgGCCGCCcGGGcCGUCGAc -3'
miRNA:   3'- -CGg---CGUG-GgCGGCGGuUCC-GCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 32078 0.66 0.326878
Target:  5'- aGCCGCACCgccucaGCCGCCcgcGGGUugguaccCCGAu -3'
miRNA:   3'- -CGGCGUGGg-----CGGCGGu--UCCGc------GGCUc -5'
18958 3' -64.2 NC_004683.1 + 18961 0.66 0.326878
Target:  5'- gGCCGCcuCCUGCgGaUCGaagucGGGCGCCGuGa -3'
miRNA:   3'- -CGGCGu-GGGCGgC-GGU-----UCCGCGGCuC- -5'
18958 3' -64.2 NC_004683.1 + 8547 0.66 0.326878
Target:  5'- aCCGCACCgGCCugaucGCCGuGGCGUuccgCGAc -3'
miRNA:   3'- cGGCGUGGgCGG-----CGGUuCCGCG----GCUc -5'
18958 3' -64.2 NC_004683.1 + 41227 0.66 0.320189
Target:  5'- cGCCGCcaagcauaaGCCCGUgCGCCugcgugacuggcuguGGGCGCCc-- -3'
miRNA:   3'- -CGGCG---------UGGGCG-GCGGu--------------UCCGCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 43971 0.66 0.319452
Target:  5'- cGCCGCGCCgggUGUCGCgGuAGG-GCaCGAGg -3'
miRNA:   3'- -CGGCGUGG---GCGGCGgU-UCCgCG-GCUC- -5'
18958 3' -64.2 NC_004683.1 + 12350 0.66 0.319452
Target:  5'- cUCGUaguaGCCUauGCCGCCAccaGCGCCGGGc -3'
miRNA:   3'- cGGCG----UGGG--CGGCGGUuc-CGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 44855 0.66 0.319452
Target:  5'- cGCCGUggugGCCCgGCCuggagGCCGA-GUGCCGAu -3'
miRNA:   3'- -CGGCG----UGGG-CGG-----CGGUUcCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 20428 0.66 0.319452
Target:  5'- gGCgGCACCgGCggugcagggGCCAccGCGCCGAu -3'
miRNA:   3'- -CGgCGUGGgCGg--------CGGUucCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 24034 0.66 0.318716
Target:  5'- aGCCGUGCUCGacgagcuUgGCCAGGGUGaCCGGc -3'
miRNA:   3'- -CGGCGUGGGC-------GgCGGUUCCGC-GGCUc -5'
18958 3' -64.2 NC_004683.1 + 1446 0.66 0.312152
Target:  5'- aGCCgagGCGCUCGCgGCCGAacucGGCGggaUCGAGc -3'
miRNA:   3'- -CGG---CGUGGGCGgCGGUU----CCGC---GGCUC- -5'
18958 3' -64.2 NC_004683.1 + 25873 0.66 0.312152
Target:  5'- gGCUGCgGCUCGgCGUCGAGuuCGCCGGGc -3'
miRNA:   3'- -CGGCG-UGGGCgGCGGUUCc-GCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 12991 0.66 0.312152
Target:  5'- gGCUGCGCgagCGCgGCUuccugccGGGCGCCGGu -3'
miRNA:   3'- -CGGCGUGg--GCGgCGGu------UCCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 25219 0.66 0.309268
Target:  5'- gGCCGCuACCCGCaccggugacggcgGCCAGGaccggcaacGCcGCCGGGu -3'
miRNA:   3'- -CGGCG-UGGGCGg------------CGGUUC---------CG-CGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 16088 0.66 0.305691
Target:  5'- uGCCGCGCCCuugucguugcgcggGUCGgugcCCGAugccuccaugaggucGGCGCCGAa -3'
miRNA:   3'- -CGGCGUGGG--------------CGGC----GGUU---------------CCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 25938 0.66 0.30498
Target:  5'- aGCCGCAgCCaGCCGUCGcgaacccagguGGCGCacaggcaGAGa -3'
miRNA:   3'- -CGGCGUgGG-CGGCGGUu----------CCGCGg------CUC- -5'
18958 3' -64.2 NC_004683.1 + 40668 0.66 0.30498
Target:  5'- cGCCaGUGCCaggacaGCCGCCAucgagaucAGGCuGCUGAu -3'
miRNA:   3'- -CGG-CGUGGg-----CGGCGGU--------UCCG-CGGCUc -5'
18958 3' -64.2 NC_004683.1 + 4873 0.66 0.30498
Target:  5'- aGCCGCcuggaGCgCGCCGCCGAacuGGC-CCGc- -3'
miRNA:   3'- -CGGCG-----UGgGCGGCGGUU---CCGcGGCuc -5'
18958 3' -64.2 NC_004683.1 + 41871 0.66 0.30498
Target:  5'- gGUCGuCACUgGCagGCCGagGGGCGcCCGAGc -3'
miRNA:   3'- -CGGC-GUGGgCGg-CGGU--UCCGC-GGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.